The complete chloroplast genome of Abeliophyllum distichum f. lilacinum Nakai (Oleaceae) from the Chungbuk Province, Korea

References

• Cho M-S, Kim Y, Kim S-C, Park J. 2019. The complete chloroplast genome of Korean Pyrus ussuriensis Maxim. (Rosaceae): providing genetic background of two types of P. ussuriensis. Mitochondrial DNA Part B. 4(2):2424–2425.
   PubMed Web of Science ®Google Scholar
• Choi YG, Yun N, Park J, Xi H, Min J, Kim Y, Oh S-H. 2020. The second complete chloroplast genome sequence of the Viburnum erosum (Adoxaceae) showed a low level of intra-species variations. Mitochondrial DNA Part B. 5(1):271–272.
   Web of Science ®Google Scholar
• Guajardo V, Solís S, Almada R, Saski C, Gasic K, Moreno MÁ. 2020. Genome-wide SNP identification in Prunus rootstocks germplasm collections using Genotyping-by-Sequencing: phylogenetic analysis, distribution of SNPs and prediction of their effect on gene function. Sci Rep. 10(1):1–14.
   PubMed Web of Science ®Google Scholar
• Jang TW, Choi JS, Park JH. 2020. Protective and inhibitory effects of acteoside from Abeliophyllum distichum Nakai against oxidative DNA damage. Mol Med Rep. 22(3):2076–2084.
   PubMed Web of Science ®Google Scholar
• Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
   PubMed Web of Science ®Google Scholar
• Kim Y, Heo K-I, Park J. 2019. The second complete chloroplast genome sequence of Pseudostellaria palibiniana (Takeda) Ohwi (Caryophyllaceae): intraspecies variations based on geographical distribution. Mitochondrial DNA Part B. 4(1):1310–1311.
   Web of Science ®Google Scholar
• Kim Y, Park J, Chung Y. 2020. The comparison of the complete chloroplast genome of Suaeda japonica Makino presenting different external morphology (Amaranthaceae). Mitochondrial DNA Part B. 5(2):1616–1618.
   Web of Science ®Google Scholar
• Kim Y, Yi J-S, Min J, Xi H, Kim DY, Son J, Park J, Jeon J-I. 2019. The complete chloroplast genome of Aconitum coreanum (H. Lév.) Rapaics (Ranunculaceae). Mitochondrial DNA Part B. 4(2):3404–3406.
   PubMed Web of Science ®Google Scholar
• Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35(6):1547–1549.
   PubMed Web of Science ®Google Scholar
• Lee TB. 1976. New forms of Abeliophyllum distichum. Korean J Pl Taxon. 7(1):21–22.
   Google Scholar
• Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv preprint arXiv:13033997.
   Google Scholar
• Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 2009. The sequence alignment/map format and SAMtools. Bioinformatics. 25(16):2078–2079.
   PubMed Web of Science ®Google Scholar
• Melchior H. 1964. Syllabus der pflanzenfamilien II. Berlin: Gebrüder Borntraeger.
   Google Scholar
• Min J, Kim Y, Xi H, Jang T, Kim G, Park J, Park J-H. 2019. The complete chloroplast genome of a new candidate cultivar, Sang Jae, of Abeliophyllum distichum Nakai (Oleaceae): initial step of A. distichum intraspecies variations atlas. Mitochondrial DNA Part B. 4(2):3716–3718.
   PubMed Web of Science ®Google Scholar
• Nakai T. 1919. Genus novum Oleacearum in Corea media inventum. Shokubutsugaku Zasshi. 33(392):153–154.
   Google Scholar
• Oh H, Kang DG, Kwon TO, Jang KK, Chai KY, Yun YG, Chung HT, Lee HS. 2003. Four glycosides from the leaves of Abeliophyllum distichum with inhibitory effects on angiotensin converting enzyme. Phytother Res. 17(7):811–813.
   PubMed Web of Science ®Google Scholar
• Oh S-H, Suh HJ, Park J, Kim Y, Kim S. 2019a. The complete chloroplast genome sequence of a morphotype of Goodyera schlechtendaliana (Orchidaceae) with the column appendages. Mitochondrial DNA Part B. 4(1):626–627.
   Web of Science ®Google Scholar
• Oh S-H, Suh HJ, Park J, Kim Y, Kim S. 2019b. The complete chloroplast genome sequence of Goodyera schlechtendaliana in Korea (Orchidaceae). Mitochondrial DNA Part B. 4(2):2692–2693.
   PubMed Web of Science ®Google Scholar
• Park J, An J-H, Kim Y, Kim D, Yang B-G, Kim T. 2020. Database of National Species List of Korea: the taxonomical systematics platform for managing scientific names of Korean native species. J Species Res. 9(3):233–246.
   Google Scholar
• Park J, Kim Y. 2019. The second complete chloroplast genome of Dysphania pumilio (R. Br.) mosyakin & clemants (Amranthaceae): intraspecies variation of invasive weeds. Mitochondrial DNA Part B. 4(1):1428–1429.
   Web of Science ®Google Scholar
• Park J, Kim Y, Xi H, Jang T, Park J-H. 2019. The complete chloroplast genome of Abeliophyllum distichum Nakai (Oleaceae), cultivar Ok Hwang 1ho: insights of cultivar specific variations of A. distichum. Mitochondrial DNA Part B. 4(1):1640–1642.
   Web of Science ®Google Scholar
• Park J, Kim Y, Xi H, Oh YJ, Hahm KM, Ko J. 2019a. The complete chloroplast genome of common camellia tree in Jeju island, Korea, Camellia japonica L. (Theaceae): intraspecies variations on common camellia chloroplast genomes. Mitochondrial DNA Part B. 4(1):1292–1293.
   Web of Science ®Google Scholar
• Park J, Kim Y, Xi H, Oh YJ, Hahm KM, Ko J. 2019b. The complete chloroplast genome of common camellia tree, Camellia japonica L.(Theaceae), adapted to cold environment in Korea. Mitochondrial DNA Part B. 4(1):1038–1040.
   Web of Science ®Google Scholar
• Park J, Min J, Kim Y, Xi H, Kwon W, Jang T, Kim G, Park J-H. 2019. The complete chloroplast genome of a new candidate cultivar, Dae Ryun, of Abeliophyllum distichum Nakai (Oleaceae). Mitochondrial DNA Part B. 4(2):3713–3715.
   PubMed Web of Science ®Google Scholar
• Park J, Xi H, Han J, Lee J, Kim Y, Lee J-m, Son J, Ahn J, Jang T, Choi J. 2020. Prediction and identification of biochemical pathway of acteoside from whole genome sequences of Abeliophyllum Distichum Nakai, cultivar Ok Hwang 1ho. J Converg Inf Technol. 10(3):76–91.
   Google Scholar
• Park, J., Min, J., Kim, Y. and Chung, Y., 2021. The Comparative Analyses of Six Complete Chloroplast Genomes of Morphologically Diverse Chenopodium album L. (Amaranthaceae) Collected in Korea. International Journal of Genomics, 2021.
   Google Scholar
• Ronquist F, Teslenko M, Van Der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61(3):539–542.
   PubMed Web of Science ®Google Scholar
• Wong MM, Gujaria-Verma N, Ramsay L, Yuan HY, Caron C, Diapari M, Vandenberg A, Bett KE. 2015. Classification and characterization of species within the genus Lens using genotyping-by-sequencing (GBS). PLoS One. 10(3):e0122025.
   PubMed Web of Science ®Google Scholar
• Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18(5):821–829.
   PubMed Web of Science ®Google Scholar
• Zhao Q-Y, Wang Y, Kong Y-M, Luo D, Li X, Hao P. 2011. Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. BMC Bioinf. 12(Suppl 14):S2.
   PubMed Web of Science ®Google Scholar