The complete chloroplast genome of Chrysanthemum zawadskii Herbich (Asteraceae) isolated in Korea

References

• Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120.
   PubMed Web of Science ®Google Scholar
• Bremer K. 1994. Asteraceae: cladistics and classification. Portland (OR): Timber Press.
   Google Scholar
• Bremer K, Humphries CJ. 1993. Generic monograph of the Asteraceae-Anthemideae. Bull Nat Hist Mus Bot Ser. 23(2):71–177.
   Google Scholar
• Chen X, Li Q, Li Y, Qian J, Han J. 2015. Chloroplast genome of Aconitum barbatum var. puberulum (Ranunculaceae) derived from CCS reads using the PacBio RS platform. Front Plant Sci. 6:42.
   PubMed Web of Science ®Google Scholar
• Heo K-I, Kim Y, Maki M, Park J. 2019. The complete chloroplast genome of mock strawberry, Duchesnea indica (Andrews) Th. Wolf (Rosoideae). Mitochondrial DNA Part B. 4(1):560–562.
   Web of Science ®Google Scholar
• Heo K-I, Park J, Kim Y. 2019. The complete chloroplast genome of new variety candidate in Korea, Potentilla freyniana var. chejuensis (Rosoideae). Mitochondrial DNA Part B. 4(1):1354–1356.
   Web of Science ®Google Scholar
• Heo K-I, Park J, Xi H, Min J. 2020. The complete chloroplast genome of Agrimonia pilosa Ledeb. isolated in Korea (Rosaceae): investigation of intraspecific variations on its chloroplast genomes. Mitochondrial DNA B Resour. 5(3):2264–2266.
   PubMed Web of Science ®Google Scholar
• Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
   PubMed Web of Science ®Google Scholar
• Kim SJ, Lee CH, Kim J, Kim KS. 2014. Phylogenetic analysis of Korean native Chrysanthemum species based on morphological characteristics. Sci Hortic. 175:278–289.
   Web of Science ®Google Scholar
• Kim Y, Heo K-I, Park J. 2019. The second complete chloroplast genome sequence of Pseudostellaria palibiniana (Takeda) Ohwi (Caryophyllaceae): intraspecies variations based on geographical distribution. Mitochondrial DNA Part B. 4(1):1310–1311.
   Web of Science ®Google Scholar
• Kim Y, Park J, Chung Y. 2020. The comparison of the complete chloroplast genome of Suaeda japonica Makino presenting different external morphology (Amaranthaceae). Mitochondrial DNA Part B. 5(2):1616–1618.
   Web of Science ®Google Scholar
• Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35(6):1547–1549.
   PubMed Web of Science ®Google Scholar
• Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv preprint arXiv:13033997. https://arxiv.org/abs/1303.3997
   Google Scholar
• Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 2009. The sequence alignment/map format and SAMtools. Bioinformatics. 25(16):2078–2079.
   PubMed Web of Science ®Google Scholar
• Liu P-L, Wan Q, Guo Y-P, Yang J, Rao G-Y. 2012. Phylogeny of the genus Chrysanthemum L.: evidence from single-copy nuclear gene and chloroplast DNA sequences. PloS One. 7(11):e48970.
   PubMed Web of Science ®Google Scholar
• Min J, Park J, Kim Y, Kwon W. 2019. The complete chloroplast genome of Artemisia fukudo Makino (Asteraceae): providing insight of intraspecies variations. Mitochondrial DNA Part B. 4(1):1510–1512.
   Web of Science ®Google Scholar
• Nicolson DH. 1999. Report of the general committee: 8. Taxon. 48(2):373–378.
   Google Scholar
• Oh S-H, Park J. 2020. The complete chloroplast genome of Euscaphis japonica (Thunb.) Kanitz (Staphyleaceae) isolated in Korea. Mitochondrial DNA B Resour. 5(3):3671–3769.
   Web of Science ®Google Scholar
• Park J, An J-H, Kim Y, Kim D, Yang B-G, Kim T. 2020. Database of National Species List of Korea: the taxonomical systematics platform for managing scientific names of Korean native species. J Species Res. 9(3):233–246.
   Google Scholar
• Park J, Heo K-I, Kim Y, Kwon W. 2019. The complete chloroplast genome of Potentilla freyniana Bornm. (Rosaceae). Mitochondrial DNA B Resour. 4(2):2420–2421.
   PubMed Web of Science ®Google Scholar
• Park J, Kim Y, Lee G-H, Park C-H. 2020. The complete chloroplast genome of Selaginella tamariscina (Beauv.) Spring (Selaginellaceae) isolated in Korea. Mitochondrial DNA Part B. 5(2):1654–1656.
   Web of Science ®Google Scholar
• Park J, Kim Y, Xi H. 2019. The complete chloroplast genome sequence of male individual of Korean endemic willow, Salix koriyanagi Kimura ex Goerz (Salicaceae). Mitochondrial DNA Part B. 4(1):1619–1621.
   Web of Science ®Google Scholar
• Park J, Kim Y, Xi H, Oh YJ, Hahm KM, Ko J. 2019a. The complete chloroplast genome of common camellia tree in Jeju island, Korea, Camellia japonica L.(Theaceae): intraspecies variations on common camellia chloroplast genomes. Mitochondrial DNA Part B. 4(1):1292–1293.
   Web of Science ®Google Scholar
• Park J, Kim Y, Xi H, Oh YJ, Hahm KM, Ko J. 2019b. The complete chloroplast genome of common camellia tree, Camellia japonica L. (Theaceae), adapted to cold environment in Korea. Mitochondrial DNA Part B. 4(1):1038–1040.
   Web of Science ®Google Scholar
• Park J, Min J, Kim Y, Chung Y. 2021. The comparative analyses of six complete chloroplast genomes of morphologically diverse Chenopodium album L. collected in Korea (Amaranthaceae). Int J Genomics. 2021:6643415–6643444.
   Web of Science ®Google Scholar
• Park J, Oh S-H. 2020. A second complete chloroplast genome sequence of Fagus multinervis Nakai (Fagaceae): intraspecific variations on chloroplast genome. Mitochondrial DNA Part B. 5(2):1868–1869.
   Web of Science ®Google Scholar
• Ronquist F, Teslenko M, Van Der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61(3):539–542.
   PubMed Web of Science ®Google Scholar
• Shin S, Lee Y, Moon SR, Koo IH, Hong H, Shin E, Lee M, Park J, Chung HS. 2010. Identification of secondary metabolites with antioxidant and antimicrobial activities from Artemisia iwayomogi and Chrysanthemum zawadskii. JKSABC. 53(6):716–723.
   Web of Science ®Google Scholar
• Trehane P. 1995. Proposal to conserve Chrysanthemum L. with a conserved type (Compositae). Taxon. 44(3):439–441.
   Google Scholar
• Xia Y, Hu Z, Li X, Wang P, Zhang X, Li Q, Lu C. 2016. The complete chloroplast genome sequence of Chrysanthemum indicum. Mitochondrial DNA A DNA Mapp Seq Anal. 27(6):4668–4669.
   PubMedGoogle Scholar
• Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18(5):821–829.
   PubMed Web of Science ®Google Scholar
• Zhao QY, Wang Y, Kong YM, Luo D, Li X, Hao P. 2011. Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. BMC Bioinf. 12(Suppl 14):S2.
   PubMed Web of Science ®Google Scholar