702
Views
3
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The complete chloroplast genome and phylogenetic analysis of Syringa reticulata subsp. amurensis (Rupr.) P.S.Green & M.C.Chang from Qinghai Province, China

ORCID Icon, , , , , , & show all
Pages 1829-1831 | Received 05 Feb 2021, Accepted 14 May 2021, Published online: 03 Jun 2021

References

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19(5):455–477.
  • Boetzer M, Henkel CV, Jansen HJ, Butler D, Pirovano W. 2011. Scaffolding pre-assembled contigs using SSPACE. Bioinformatics. 27:578–579.
  • Chang MC, Qui LQ, Wei Z, Green PS. 1996. Oleaceae. In: Wu Z, Raven PH, editors. Flora of China. Beijing: Science Press and Missouri Botanical Garden; p. 272–319.
  • Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure from small quantities of fresh leaf tissues. Phytochem Bull. 19:11–15.
  • Dupin J, Raimondeau P, Hong-Wa C, Manzi S, Gaudeul M, Besnard G. 2020. Resolving the phylogeny of the olive family (Oleaceae): confronting information from organellar and nuclear genomes. Genes. 11(12):1508.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Kumar S, Stecher G, Tamura K. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 33(7):1870–1874.
  • Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat Methods. 9(4):357–359.
  • Li J, Alexander JH, Zhang D. 2002. Paraphyletic Syringa (Oleaceae): evidence from sequences of nuclear ribosomal DNA ITS and ETS regions. Sys Bot. 27(3):592–597.
  • Liu C, Shi L, Zhu Y, Chen H, Zhang J, Lin X, Guan X. 2012. CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences. BMC Genomics. 13(1):715.
  • Nei M, Kumar S. 2000. Molecular evolution and phylogenetics. New York (NY): Oxford University Press; p. 152–159.
  • Nock CJ, Hardner CM, Montenegro JD, Termizi AAA, Hayashi S, Playford J, Edwards D, Batley J. 2019. Wild origins of macadamia domestication identified through intraspecific chloroplast genome sequencing. Front Plant Sci. 10:334.
  • Wang J, Cao Q, Wang K, Xing R, Wang L, Zhou D. 2019. Characterization of the complete chloroplast genome of Pterygocalyx volubilis (Gentianaceae). Mitochondrial DNA Part B. 4(2):2579–2580.
  • Wang J, Wang W, Xiong P, Ye D, Jing M, Zhou H. 2020. The sequence and characterization of the complete plastome of Syringa reticulata subsp. pekinensis (Oleaceae). Mitochondrial DNA Part B. 5(2):2015–2017.
  • Zhu W, Wang Z, Sun Y, Yang B, Wang Q, Kuang H. 2021. Traditional uses, phytochemistry and pharmacology of genus Syringa: a comprehensive review. J Ethnopharmacol. 226:113465.