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Mitogenome Announcement

The complete chloroplast genome of Androsace erecta (Primulaceae) and its phylogenetic implication

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Pages 1987-1989 | Received 08 Mar 2021, Accepted 29 May 2021, Published online: 14 Jun 2021

References

  • Boucher FC, Thuiller W, Roquet C, Douzet R, Aubert S, Alvarez N, Lavergne S. 2012. Reconstructing the origins of high-alpine niches and cushion life form in the genus Androsace s.l. (Primulaceae). Evolution. 66(4):1255–1268.
  • Dentant C. 2018. The highest vascular plants on Earth. Alp Bot. 128(2):97–106.
  • Dentant C, Lavergne S, Malecot V. 2018. Taxonomic revision of West-Alpine cushion plant species belonging to Androsace subsect Aretia. Bot Lett. 165(3–4):337–351.
  • Dixon CJ, Gutermann W, Schönswetter P, Schneeweiss GM. 2016. Taxonomy and nomenclature of the polymorphic European high mountain species Androsace vitaliana (L.) Lapeyr. (Primulaceae). PhytoKeys. 75:93–106.
  • Dong W, Liu J, Yu J, Wang L, Zhou S. 2012. Highly variable chloroplast markers for evaluating plant phylogeny at low taxonomic levels and for DNA barcoding. PLoS One. 7(4):e35071.
  • Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19(1):11–15.
  • Hu Q. 1994. On the geographical distribution of the Primulaceae. J Trop Subtrop Bot. 2(4):1–14.
  • Hu CM, Kelso S. 1996. Flora of China. 15. Cambridge: Science Press, Beijing & Cambridge University Press; p. 295.
  • Jin JJ, Yu WB, Yang JB, Song Y, dePamphilis CW, Yi TS, Li DZ. 2020. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21(1):241.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649.
  • Knuth R, Pax F. 1905. Das Pflanzenreich. 4. Leipzig, Germany: Wilhelm Engelmann; p. 386.
  • Rambaut A. 2010. FigTree v1.3.1. Edinburgh, Scotland: Institute of Evolutionary Biology, University of Edinburgh. http://tree.bio.ed.ac.uk/software/figtree/.
  • Roquet C, Boucher FC, Thuiller W, Lavergne S. 2013. Replicated radiations of the alpine genus Androsace (Primulaceae) driven by range expansion and convergent key innovations. J Biogeogr. 40(10):1874–1886.
  • Rozas J, Ferrer-Mata A, Sánchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, Sánchez-Gracia A. 2017. DnaSP 6: DNA sequence polymorphism analysis of large data sets. Mol Biol Evol. 34(12):3299–3302.
  • Schneeweiss GM, Schonswetter P, Kelso S, Niklfeld H. 2004. Complex biogeographic patterns in Androsace (Primulaceae) and related genera: evidence from phylogenetic analyses of nuclear internal transcribed spacer and plastid trnL-F sequences. Syst Biol. 53(6):856–876.
  • Shaw J, Lickey EB, Schilling EE, Small RL. 2007. Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. Am J Bot. 94(3):275–288.
  • Shi L, Chen H, Jiang M, Wang L, Wu X, Huang L, Liu C. 2019. CPGAVAS2, an integrated plastome sequence annotator and analyzer. Nucleic Acids Res. 47(W1):W65–W73.
  • Smith G, Lowe D, Christopher GW. 1997. The genus ‘Androsace’: a monograph for gardeners and botanists. Dorset: Alpine Garden Society Publications Limited,
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30(9):1312–1313.
  • Wang YJ, Li XJ, Liu JQ. 2004. Molecular phylogeny and biogeography of Androsace (Primulaceae) and the convergent evolution of cushion morphology. J Syst Evol. 42(6):481–499.