The complete mitogenome of the inarticulate brachiopod Glottidia pyramidata reveals insights into gene order variation, deviant ATP8 and mtORFans in the Brachiopoda

References

• Breton S, Beaupré HD, Stewart DT, Hoeh WR, Blier PU. 2007. The unusual system of doubly uniparental inheritance of mtDNA: isn't one enough? Trends Genet. 23(9):465–474.
   PubMed Web of Science ®Google Scholar
• Breton S, Ghiselli F, Passamonti M, Milani L, Stewart DT, Hoeh WR. 2011a. Evidence for a fourteenth mtDNA-encoded protein in the female-transmitted mtDNA of marine mussels (Bivalvia: Mytilidae). PLOS One. 6(4):e19365.
   PubMed Web of Science ®Google Scholar
• Breton S, Milani L, Ghiselli F, Guerra D, Stewart DT, Passamonti M. 2014. A resourceful genome: updating the functional repertoire and evolutionary role of animal mitochondrial DNAs. Trends Genet. 30(12):555–564.
   PubMed Web of Science ®Google Scholar
• Breton S, Stewart DT. 2015. Atypical mitochondrial inheritance patterns in eukaryotes. Genome. 58(10):423–431.
   PubMed Web of Science ®Google Scholar
• Breton S, Stewart DT, Hoeh WR. 2010. Characterization of a mitochondrial ORF from the gender-associated mtDNAs of Mytilus spp. (Bivalvia: Mytilidae): identification of the “missing” ATPase 8 gene. Mar Genomics. 3(1):11–18.
   PubMed Web of Science ®Google Scholar
• Breton S, Stewart DT, Shepardson S, Trdan RJ, Bogan AE, Chapman EG, Ruminas AJ, Piontkivska H, Hoeh WR. 2011b. Novel protein genes in animal mtDNA: a new sex determination system in freshwater mussels (Bivalvia: Unionoida)? Mol Biol Evol. 28(5):1645–1659.
   PubMed Web of Science ®Google Scholar
• Capt C, Bouvet K, Guerra D, Robicheau BM, Stewart DT, Pante E, Breton S. 2020. Unorthodox features in two venerid bivalves with doubly uniparental inheritance of mitochondria. Sci Rep. 10(1):1087.
   PubMed Web of Science ®Google Scholar
• Carlson SJ. 2016. The evolution of Brachiopoda. Annu Rev Earth Planet Sci. 44(1):409–438.
   Google Scholar
• Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32(5):1792–1797.
   PubMed Web of Science ®Google Scholar
• Emig CC, Bitner MA, Álvarez F. 2013. Phylum Brachiopoda. In: Zhang Z-Q, editor. Animal biodiversity: an outline of higher-level classification and survey of taxonomic richness. Auckland: Magnolia Press; p. 75–78.
   Google Scholar
• Endo K, Noguchi Y, Ueshima R, Jacobs HT. 2005. Novel repetitive structures, deviant protein-encoding sequences and unidentified ORFs in the mitochondrial genome of the brachiopod Lingula anatina. J Mol Evol. 61(1):36–53.
   PubMed Web of Science ®Google Scholar
• Guerra D, Bouvet K, Breton S. 2018. Mitochondrial gene order evolution in Mollusca: inference of the ancestral state from the mtDNA of Chaetopleura apiculata (Polyplacophora, Chaetopleuridae). Mol Phylogenet Evol. 120:233–239.
   PubMed Web of Science ®Google Scholar
• Guerra D, Lopes-Lima M, Froufe E, Ming Gan H, Paz O, Amaro R, Klunzinger MW, Callil C, Prié V, Bogan AE, et al. 2019. Variability of mitochondrial ORFans hints at possible differences in the system of doubly uniparental inheritance of mitochondria among families of freshwater mussels (Bivalvia: Unionida). BMC Evol Biol. 19(1):229.
   PubMed Web of Science ®Google Scholar
• Helfenbein KG, Brown WM, Boore JL. 2001. The complete mitochondrial genome of the articulate brachiopod Terebratalia transversa. Mol Biol Evol. 18(9):1734–1744.
   PubMed Web of Science ®Google Scholar
• Karagozlu MZ, Kim S-G, Thinh DD, Kim C-B. 2017a. Complete mitochondrial genome analysis of Lingula anatina from Korea (Brachiopoda, Lingulida, Lingulidae). Mitochondrial DNA B Resour. 2(2):829–830.
   PubMed Web of Science ®Google Scholar
• Karagozlu MZ, Kim S-G, Thinh DD, Kim C-B. 2017b. Complete mitochondrial genome of Laqueus japonicus (Brachiopoda, Terebratulida, Laqueidae). Mitochondrial DNA B Resour. 2(2):883–884.
   PubMed Web of Science ®Google Scholar
• Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35(6):1547–1549.
   PubMed Web of Science ®Google Scholar
• Lubośny M, Przyłucka A, Śmietanka B, Breton S, Burzyński A. 2018. Actively transcribed and expressed atp8 gene in Mytilus edulis mussels. PeerJ. 6:e4897.
   PubMed Web of Science ®Google Scholar
• Luo Y-J, Satoh M, Endo K. 2015. Mitochondrial gene order variation in the brachiopod Lingula anatina and its implications for mitochondrial evolution in lophotrochozoans. Mar Genomics. 24 Pt 1:31–40.
   PubMed Web of Science ®Google Scholar
• Milani L, Ghiselli F, Guerra D, Breton S, Passamonti M. 2013. A comparative analysis of mitochondrial ORFans: new clues on their origin and role in species with doubly uniparental inheritance of mitochondria. Genome Biol Evol. 5(7):1408–1434.
   PubMed Web of Science ®Google Scholar
• Noguchi Y, Endo K, Tajima F, Ueshima R. 2000. The mitochondrial genome of the brachiopod Laqueus rubellus. Genetics. 155(1):245–259.
   PubMed Web of Science ®Google Scholar
• Stechmann A, Schlegel M. 1999. Analysis of the complete mitochondrial DNA sequence of the brachiopod Terebratulina retusa places Brachiopoda within the protostomes. Proc Biol Sci. 266(1433):2043–2052.
   PubMed Web of Science ®Google Scholar
• Stewart DT, Breton S, Chase EE, Robicheau BM, Bettinazzi S, Pante E, Youssef N, Garrido-Ramos MA. 2020. An unusual evolutionary strategy: the origins, genetic repertoire, and implications of doubly uniparental inheritance of mitochondrial DNA in bivalves. In: Pontarotti P, editor. Evolutionary biology from concept to application. Berlin: Springer-Verlag; p. 301–323.
   Google Scholar
• Thayer CW. 1985. Brachiopods vs. mussels: competition, predation, and palatability. Science. 228(4707):1527–1528.
   PubMed Web of Science ®Google Scholar