Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 6, 2021 - Issue 9
Submit an article Journal homepage
590
Views
1
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

Complete chloroplast genome sequences of the medicinal plant Piper hancei

Lvshui Zhanga College of Landscape Architecture and Arts, Jiangxi Agricultural University, Nanchang, ChinaView further author information
,
Xiaokang Hub Gannan Arboretum, Ganzhou, ChinaView further author information
&
Mu Liua College of Landscape Architecture and Arts, Jiangxi Agricultural University, Nanchang, ChinaCorrespondence[email protected]
View further author information
Pages 2775-2776 | Received 29 Apr 2021, Accepted 30 Jul 2021, Published online: 27 Aug 2021

References

  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120.
  • Cai Z, Penaflor C, Kuehl JV, Leebens-Mack J, Carlson JE, dePamphilis CW, Boore JL, Jansen RK. 2006. Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids. BMC Evol Biol. 6:77.
  • Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T. 2009. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics. 25(15):1972–1973.
  • Dong W, Sun J, Liu Y, Xu C, Wang Y, Suo Z, Zhou S, Zhang Z, Wen J. 2021. Phylogenomic relationships and species identification of the olive genus Olea (Oleaceae). J System Evol.doi: https://doi.org/10.1111/jse.12802
  • Dong W, Xu C, Liu Y, Shi J, Li W, Suo Z. 2021. Chloroplast phylogenomics and divergence times of Lagerstroemia (Lythraceae). BMC Genom. 22(1):434.
  • Huang DI, Cronk QCB. 2015. Plann: A command-line application for annotating plastome sequences. Appl Plant Sci. 3(8):1500026.
  • Jin J-J, Yu W-B, Yang J-B, Song Y, dePamphilis CW, Yi T-S, Li D-Z. 2020. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21(1):241.doi:https://doi.org/10.1186/s13059-020-02154-5. PMC: 32912315
  • Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 14(6):587–589.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Kozlov AM, Darriba D, Flouri T, Morel B, Stamatakis A. 2019. RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference. Bioinformatics. 35(21):4453–4455.
  • Li J, Wang S, Jing Y, Wang L, Zhou S. 2013. A modified CTAB protocol for plant DNA extraction. Chinese Bullet Bot. 48:72–78.
  • Li S-M, Hah G-Q. 1987. Studies on the chemical constituents of Piper hancei Maxim III. J Integr Plant Biol. 29(3):293–296.
  • Wang X, Wang L. 2016. GMATA: an integrated software package for genome-scale SSR mining, marker development and viewing. Front Plant Sci. 7:1350.
  • Wang M, Wang X, Sun J, Wang Y, Ge Y, Dong W, Yuan Q, Huang L. 2021. Phylogenomic and evolutionary dynamics of inverted repeats across Angelica plastomes. BMC Plant Biol. 21(1):26.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.