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Mitochondrial DNA Part B
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Volume 6, 2021 - Issue 10
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Mitogenome Announcement

Characterization and phylogenetic analysis of the complete chloroplast genome of Ilex rotunda, traditional Chinese medicine plant

Hong ChenJiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, ChinaView further author information
,
Xinran ChongJiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, ChinaView further author information
,
Yanwei ZhouJiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, ChinaView further author information
,
Linhe SunJiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, ChinaView further author information
,
Fan ZhangJiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, ChinaView further author information
,
Xiaoqing LuJiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, ChinaView further author information
,
Naiwei LiJiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, ChinaView further author information
,
Ting ZhouJiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, ChinaView further author information
&
Yunlong LiJiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, ChinaCorrespondence[email protected]
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Pages 2791-2792 | Received 11 May 2021, Accepted 08 Aug 2021, Published online: 31 Aug 2021

References

  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18.
  • Hao DC, Gu XJ, Xiao PG. 2015. Phytochemistry and biology of Ilex pharmaceutical resources. Med Plants. 2015:531–585.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Nei M, Kumar S. 2000. Molecular evolution and phylogenetics. New York: Oxford University Press.
  • Nguyen LT, Schmidt HA, Von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274.
  • Su T, Zhang M, Shan Z, Li X, Zhou B, Wu H, Han M. 2020. Comparative survey of morphological variations and plastid genome sequencing reveals phylogenetic divergence between four endemic Ilex species. Forests. 11(9):964.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq – versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–W11.
  • Xie Y, Wu F, Fang X. 2019. Middle Eocene East Asian monsoon prevalence over southern China: evidence from palynological records. Glob Planet Change. 175:13–26.
  • Yao X, Song Y, Yang JB, Tan YH, Corlett RT. 2021. Phylogeny and biogeography of the hollies (Ilex L., Aquifoliaceae). J Syst Evol. 59(1):73–82.

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