Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 6, 2021 - Issue 10
Submit an article Journal homepage
936
Views
1
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The complete chloroplast genome of weedy rice Oryza sativa f. spontanea

Chenfeng Donga Institute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, ChinaView further author information
,
Yiyu Hua Institute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, ChinaView further author information
,
Chuyu Yea Institute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, ChinaView further author information
,
Longjiang Fana Institute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, ChinaView further author information
&
Longbiao Guob State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, ChinaCorrespondence[email protected]
View further author information
Pages 3016-3017 | Received 05 Jul 2021, Accepted 27 Aug 2021, Published online: 22 Sep 2021

References

  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18–e18.
  • Estorninos LE, Gealy DR, Gbur EE, Talbert RE, McClelland MR. 2005. Rice and red rice interference. II. Rice response to population densities of three red rice (Oryza sativa) ecotypes. Weed Sci. 53(5):683–689.
  • Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30(14):3059–3066.
  • Letunic I, Bork P. 2019. Interactive Tree Of Life (iTOL) v4: recent updates and new developments. Nucleic Acids Res. 47(W1):W256–59.
  • Nadir S, Xiong HB, Zhu Q, Zhang XL, Xu HY, et al. 2017. Weedy rice in sustainable rice production. A review. Agron Sustain Dev. 37(5):46.
  • Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274.
  • Oerke EC. 2006. Crop losses to pests. J Agric Sci. 144(1):31–43.
  • Patel RK, Jain M. 2012. NGS QC toolkit: a toolkit for quality control of next generation sequencing data. PLoS One. 7(2):e30619.
  • Qiu J, Jia L, Wu D, Weng X, Chen L, Sun J, Chen M, Mao L, Jiang B, Ye C, et al. 2020. Diverse genetic mechanisms underlie worldwide convergent rice feralization. Genome Biol. 21(1):70.
  • Qiu J, Zhou Y, Mao L, Ye C, Wang W, Zhang J, Yu Y, Fu F, Wang Y, Qian F, et al. 2017. Genomic variation associated with local adaptation of weedy rice during de-domestication. Nat Commun. 8(1):15323.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq – versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–11.
  • Ziska LH, Gealy DR, Burgos N, Caicedo AL, Gressel J, et al. 2015. Chapter Three–- Weedy (Red) rice: an emerging constraint to global rice production. In: Sparks DL editor, Advances in agronomy, Vol. 129. Cambridge: Academic Press; p. 181–228.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.