Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 6, 2021 - Issue 11
Submit an article Journal homepage
1,021
Views
1
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The complete chloroplast genome of Echinochloa haploclada

Bowen JiangInstitute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, ChinaView further author information
,
Sangting LaoInstitute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, ChinaView further author information
,
Dongya WuInstitute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, ChinaView further author information
,
Longjiang FanInstitute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, ChinaView further author information
&
Chu-Yu YeInstitute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, ChinaCorrespondence[email protected]
View further author information
Pages 3105-3106 | Received 26 Mar 2021, Accepted 05 Sep 2021, Published online: 30 Sep 2021

References

  • Aoki D, Yamaguchi H. 2008. Genetic relationship between Echinochloa crus-galli and Echinochloa oryzicola accessions inferred from internal transcribed spacer and chloroplast DNA sequences. Weed Biol Manag. 8(4):233–242.
  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18.
  • Katoh K, Misawa K, Kuma KI, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30(14):3059–3066.
  • Lee J, Kim JW, Lee IY, Ahn JH. 2017. Comparison of the complete genomes of two Echinochloa species: barnyard grass and jungle rice. Mitochondrial DNA Part B. 2(2):512–513.
  • Letunic I, Bork P. 2019. Interactive Tree Of Life (iTOL) v4: recent updates and new developments. Nucleic Acids Res. 47(W1):W256–W259. doi:https://doi.org/10.1093/nar/gkz239.
  • Nah G, Im JH, Kim JW, Kim K, Lim JS, Choi AY, Cho IY, Yang TJ, Park TS, Lee DK, et al. 2016. The complete chloroplast genomes of three Korean Echinochloa crus-galli accessions. Mitochondrial DNA Part A. 27(6):4357–4358.
  • Nguyen LT, Schmidt HA, Haeseler A, Minh BQ. 2015. IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274.
  • Patel RK, Jain M. 2012. NGS QC Toolkit: a toolkit for quality control of next generation sequencing data. PLoS One. 7(2):e30619.
  • Perumal S, Jayakodi M, Kim DS, Yang T, Natesan S. 2016. The complete chloroplast genome sequence of Indian barnyard millet, Echinochloa frumentacea (Poaceae). Mitochondrial DNA Part B. 1(1):79–80.
  • Piot A, Hackel J, Christin PA, Guillaume B. 2018. One-third of the plastid genes evolved under positive selection in PACMAD grasses. Planta. 247(1):255–266.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht ES, Fischer A, Bock R, Greiner S. 2017. GeSeq – versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–W11.
  • Ye CY, Fan LJ. 2021. Orphan crops and their wild relatives in the genomic era. Mol Plant. 14(1):27–39.
  • Ye CY, Lin ZX, Li GM, Wang YY, Qiu J, Fu F, Zhang HQ, Chen L, Ye SS, Song WJ, Jin GL, Zhu JW, et al. 2014. Echinochloa chloroplast genomes: insights into the evolution and taxonomic identification of two weedy species. PLoS One. 9(11):e113657.
  • Ye CY, Wu DY, Mao LF, Jia L, Qiu J, Lao ST, Chen MH, Jiang BW, Tang W, Peng Q, et al. 2020. The genomes of the allohexaploid Echinochloa crus-galli and its progenitors provide insights into polyploidization-driven adaptation. Mol Plant. 13(9):1298–1310.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.