1,185
Views
1
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

Complete mitochondrial genomes of two sand diver species (Perciformes, Trichonotidae): novel gene orders and phylogenetic position within Gobiiformes

ORCID Icon &
Pages 12-14 | Received 01 Sep 2021, Accepted 06 Nov 2021, Published online: 10 Dec 2021

References

  • Bergsten J. 2005. A review of long-branch attraction. Cladistics. 21(2):163–193.
  • Betancur RR, Wiley EO, Arratia G, Acero A, Bailly N, Miya M, Lecointre G, Ortí G. 2017. Phylogenetic classification of bony fishes. BMC Evol Biol. 17(1):162.
  • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 17(4):540–552.
  • Dowton M, Austin AD. 1999. Evolutionary dynamics of a mitochondrial rearrangement "hot spot" in the hymenoptera. Mol Biol Evol. 16(2):298–309.
  • Edler D, Klein J, Antonelli A, Silvestro D. 2021. raxmlGUI 2.0: a graphical interface and toolkit for phylogenetic analyses using RAxML. Methods Ecol. Evol. 12:373–377.
  • Katayama E, Endo H. 2010. Redescription of a Sanddiver, Trichonotus blochii (Actinopterygii: Perciformes: Trichonotidae), with confirmation of its validity. SpecDiv. 15(1):1–10.
  • Kuiter RH, Tonozuka T. 2004. Pictorial guide to: Indonesian reef fishes, part 2, 2nd ed., PT Dive & Dive’s, Bali, Denpasar.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Lanfear R, Frandsen PB, Wright AM, Senfeld T, Calcott B. 2017. PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Mol Biol Evol. 34(3):772–773.
  • McCraney WT, Thacker CE, Alfaro ME. 2020. Supermatrix phylogeny resolves goby lineages and reveals unstable root of Gobiaria. Mol Phylogenet Evol. 151:106862.
  • Miya M, Nishida M. 1999. Organization of the mitochondrial genome of a deep-sea fish, Gonostoma gracile (Teleostei: Stomiiformes): first example of transfer RNA gene rearrangements in bony fishes. Mar Biotechnol. 1(5):416–426.
  • Miya M, Friedman M, Satoh TP, Takeshima H, Sado T, Iwasaki W, Yamanoue Y, Nakatani M, Mabuchi K, Inoue JG, et al. 2013. Evolutionary origin of the scombridae (tunas and mackerels): members of a paleogene adaptive radiation with 14 other pelagic fish families. PLOS One. 8(9):e73535.
  • Nelson JS, Grande TC, Wilson MVH. 2016. Fishes of the world. 5th ed. Hoboken, New Jersey: John Wiley & Sons, Inc.
  • Satoh TP, Miya M, Mabuchi K, Nishida M. 2016. Structure and variation of the mitochondrial genome of fishes. BMC Genomics. 17:719.
  • Shao R. Dowton M, Murrell A, Barker SC. 2003. Rates of Gene Rearrangement and Nucleotide Substitution Are Correlated in the Mitochondrial Genomes of Insects. Mol. Biol. Evol. 20(10):1612–1619. doi:https://doi.org/10.1093/molbev/msg176.
  • Shimada K, Yoshino T. 1984. A new trichonotid fish from the Yaeyama Islands, Okinawa Prefecture, Japan. Jpn J Ichthyol. 31:5–1.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30(9):1312–1313.
  • Steindachner F. 1867. Icththyologische Notizen (V). Sitzungsberichte Der Kaiserlichen Akademie Der Wissenchaften-Naturwissenschaftliche Class. 55:701–716.
  • Thacker CE, Satoh TP, Katayama E, Harrington RC, Eytan RI, Near TJ. 2015. Molecular phylogeny of Percomorpha resolves Trichonotus as the sister lineage to Gobioidei (Teleostei: Gobiiformes) and confirms the polyphyly of Trachinoidei. Mol Phylogenet Evol. 93:172–179.