2,237
Views
1
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper

ORCID Icon, ORCID Icon, ORCID Icon, ORCID Icon, , ORCID Icon, ORCID Icon & ORCID Icon show all
Pages 156-158 | Received 29 Aug 2021, Accepted 26 Nov 2021, Published online: 05 Jan 2022

References

  • Aliaga J, Portalatino E, Obregón K, Rodríguez A, Jimenez J. 2019. Presencia del “ají nativo supano” (Capsicum chinense Jacq.) en el valle de Supe, Perú. Peruv Agric Res. 1(2):58–63.
  • Arbizu CI, Ellison SL, Senalik D, Simon PW, Spooner DM. 2016. Genotyping-by-sequencing provides the discriminating power to investigate the subspecies of Daucus carota (Apiaceae). BMC Evol Biol. 16(1):1–16.
  • Arbizu CI, Simon PW, Martínez-Flores F, Ruess H, Crespo MB, Spooner DM. 2016. Integrated molecular and morphological studies of the Daucus guttatus complex (Apiaceae). Syst Bot. 41(2):479–492.
  • Carrizo García C, Barfuss MH, Sehr EM, Barboza GE, Samuel R, Moscone EA, Ehrendorfer F. 2016. Phylogenetic relationships, diversification and expansion of chili peppers (Capsicum, Solanaceae). Ann Bot. 118(1):35–51.
  • D’Agostino N, Tamburino R, Cantarella C, De Carluccio V, Sannino L, Cozzolino S, Cardi T, Scotti N. 2018. The complete plastome sequences of eleven capsicum genotypes: insights into DNA variation and molecular evolution. Genes. 9(10):503.
  • Doyle JJ, Doyle JL. 1990. Isolation of plant DNA from fresh tissue. Focus. 12(13):39–40.
  • Ince AG, Karaca M, Onus AN. 2010. Genetic relationships within and between capsicum species. Biochem Genet. 48(1-2):83–95.
  • Jin JJ, Yu WB, Yang JB, Song Y, Depamphilis CW, Yi TS, Li DZ. 2020. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21(1):1–31.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Martin M. 2011. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet J. 17(1):10–12.
  • Martínez-Flores F, Arbizu CI, Reitsma K, Juan A, Simon PW, Spooner DM, Crespo MB. 2016. Lectotype designation for seven species names in the Daucus guttatus complex (Apiaceae) from the central and eastern Mediterranean basin. Systematic Botany. 41(2):464–478.
  • Meckelmann SW, Riegel DW, van Zonneveld M, Ríos L, Peña K, Ugas R, Quiñonez L, Mueller-Seitz E, Petz M. 2013. Compositional characterization of native Peruvian chili peppers (Capsicum spp.). J Agric Food Chem. 61(10):2530–2537.
  • Morales-Soriano E, Kebede B, Ugás R, Grauwet T, Van Loey A, Hendrickx M. 2018. Flavor characterization of native Peruvian chili peppers through integrated aroma fingerprinting and pungency profiling. Food Res Int. 109:250–259.
  • Sebastin R, Lee KJ, Cho GT, Shin MJ, Kim SH, Hyun DY, Lee JR. 2019. The complete chloroplast genome sequence of a Bolivian wild chili pepper, Capsicum Eximium Hunz.(Solanaceae). Mitochondr DNA Part B. 4(1):1634–1635.
  • Shiragaki K, Yokoi S, Tezuka T. 2020. Phylogenetic analysis and molecular diversity of capsicum based on rDNA-ITS region. Horticulturae. 6(4):87.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30(9):1312–1313.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq–versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–W11.
  • Tripodi P, Rabanus-Wallace MT, Barchi L, Kale S, Esposito S, Acquadro A, Schafleitner R, van Zonneveld M, Prohens J, Diez MJ. 2021. Global range expansion history of pepper (Capsicum spp.) revealed by over 10,000 genebank accessions. Proc Natl Acad Sci USA. 118(34):e2104315118.