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Mitogenome Announcement

Characterization of the complete chloroplast genome sequence of Isodon japonicus (N. Burman) H. Hara (Lamiaceae)

ORCID Icon, , , , &
Pages 1713-1715 | Received 25 Jan 2022, Accepted 07 Sep 2022, Published online: 23 Sep 2022

References

  • Beier S, Thiel T, Münch T, Scholz U, Mascher M. 2017. MISA-web: a web server for microsatellite prediction. Bioinformatics. 33(16):2583–2585.
  • Benson G. 1999. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27(2):573–580.
  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18.
  • Ding L, Jing HW, Wang T, et al. 2010. Chemical constituents and allelopathic potential of Isodon japonica (Burman f.) Hara. J Northwest Normal Univ (Natural Science). 46(2):88–93.
  • Di XM. 2015. Advances of study on the chemical constituents and pharmacological effects of Isodon japonica. Anhui Med Pharm J. 19(12):2255–2258.
  • Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
  • Jin Y, Tian T, Ma Y, Liu M, Xie W, Wang X, Xu H, Du Y. 2016. Differentiation of Isodon japonica and adulterants based on identification and quantitation 14 diterpenoids using LC-MS-MS library search approach and hierarchical cluster analysis. J Chromatogr Sci. 54(3):367–376.
  • Jin Y, Tian T, Ma Y, Hou L, Guan S, Sun W, Du Y, Zhang L. 2019. Chemical profiling and total quality assessment of Isodon japonica using data-independent acquisition mode combined with superimposed multiple product ion UHPLC-Q-TOF-MS and chemometric analysis. RSC Adv. 9(3):1403–1418.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Lohse M, Drechsel O, Bock R. 2007. Organellar Genome DRAW(OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genome. Curr Genet. 52(5–6):267–274.
  • Miller MA, Pfeiffer W, Schwartz T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: 2010 Gateway Computing Environments Workshop (GCE). New Orleans, LA:IEEE Computer Society; 1–8.
  • Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP, et al. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61(3):539–542.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30(9):1312–1313.
  • Xiang ZB, Chen HS, Wang GL, et al. 2010. Study on chemical ingredients of Rabdosia japonica (II). Chin Tradit Patent Med. 32:1622–1623.
  • Li HW, Hedge IC. 1994. Lamiaceae. In: Wu ZY, Raven PH. Flora of China. Beijing: Science Press; St. Louis: Missouri Botanical Garden Press. 17:274-275.
  • Zhang D, Gao F, Jakovlić I, Zou H, Zhang J, Li WX, Wang GT. 2020. PhyloSuite: an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. Mol Ecol Resour. 20(1):348–355.
  • Zhao F, Chen Y-P, Salmaki Y, Drew BT, Wilson TC, Scheen A-C, Celep F, Bräuchler C, Bendiksby M, Wang Q, et al. 2021. An updated tribal classification of Lamiaceae based on plastome phylogenomics. BMC Biol. 19(1):2–27.