989
Views
1
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

Complete mitochondrial genome of the branching octocoral Paramuricea grayi (Johnson, 1861), phylogenetic relationships and divergence analysis

ORCID Icon, , , , , , , ORCID Icon, , , , ORCID Icon & ORCID Icon show all
Pages 1985-1988 | Received 29 Sep 2022, Accepted 31 Oct 2022, Published online: 15 Nov 2022

References

  • Altuna A. 1991. On the presence of Paramuricea grayi (Johnson, 1861) (Cnidaria, Anthozoa), in the Basque Coast. Munibe. 43:85–90.
  • Brockman SA, McFadden CS. 2012. The mitochondrial genome of Paraminabea aldersladei (Cnidaria: Anthozoa: Octocorallia) supports intramolecular recombination as the primary mechanism of gene rearrangement in octocoral mitochondrial genomes. Genome Biol Evol. 4(9):994–1006.
  • Calderón I, Garrabou J, Aurelle D. 2006. Evaluation of the utility of COI and ITS markers as tools for population genetic studies of temperate gorgonians. J Exp Mar Biol Ecol. 336(2):184–197.
  • Coelho MAG, Pearson G, Boavida J, Paulo D, Aurelle D, Arnaud-Haond S, Gómez-Gras D, Bensoussan N, López-Sendino P, Cerrano C, et al. 2022. Not out of the Mediterranean: Atlantic populations of the gorgonian Paramuricea clavata are a separate sister species under further lineage diversification. Authorea. DOI: 10.22541/au.165544523.32209087/v1
  • DeLeo DM, Herrera S, Lengyel SD, Quattrini AM, Kulathinal RJ, Cordes EE. 2018. Gene expression profiling reveals deep-sea coral response to the Deepwater Horizon oil spill. Mol Ecol. 27(20):4066–4077.
  • Dias V, Oliveira F, Boavida J, Serrão EA, Gonçalves JMS, Coelho MAG. 2020. High coral bycatch in bottom-set gillnet coastal fisheries reveals rich coral habitats in Southern Portugal. Front Mar Sci. 7:1.
  • Donath A, Jühling F, Al-Arab M, Bernhart SH, Reinhardt F, Stadler PF, Middendorf M, Bernt M. 2019. Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes. Nucleic Acids Res. 47(20):10543–10552.
  • Gómez-Gras D, Bensoussan N, Ledoux JB, López-Sendino P, Cerrano C, Ferretti E, Bakran-Petricioli SK, Cruz T, Gómez-Garrido F, Alioto J, et al. in review. Exploring the response of a key Mediterranean habitat-forming gorgonian to heat stress across biological and spatial scales. Sci Rep.
  • Grasshoff M. 1977. Die Gorgonarien des östlichen Nordatlantik und des Mittelmeeres III. Die Familie Paramuriceidae (Cnidaria, Anthozoa). Meteor Forsch-Ergebnisse. 27:5–76.
  • Grasshoff M. 1992. Die Flachwasser-Gorgonarien von Europa und Westafrika (Cnidaria, Anthozoa). Courier Forsch-Inst Senckenberg. 149:1–135.
  • Hooper L, Jenkins TL, Griffiths AM, Moore KA, Stevens JR. 2021. The complete mitochondrial genome of the pink sea fan, Eunicella verrucosa (Pallas, 1766). Mitochondrial DNA B Resour. 6(11):3309–3311.
  • McFadden CS, van Ofwegen LP, Quattrini AM. 2022. Revisionary systematics of Octocorallia (Cnidaria: Anthozoa) guided by phylogenomics. B Soc Syst Biolog. 1:8735.
  • Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, Haeseler AV, Lanfear R, Teeling E. 2020. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Mol Biol Evol. 37(5):1530–1534.
  • Muthye V, Mackereth CD, Stewart JB, Lavrov DV. 2022. Large dataset of octocoral mitochondrial genomes provides new insights into mt-mutS evolution and function. DNA Repair. 110:103273.
  • Nachtigall PG, Grazziotin FG, Junqueira-De-Azevedo ILM. 2021. MITGARD: an automated pipeline for mitochondrial genome assembly in eukaryotic species using RNA-seq data. Brief Bioinform. 22(5):1–15.
  • Nestorowicz I-M, Oliveira F, Monteiro P, Bentes L, Henriques NS, Aguilar R, Costa BE, Gonçalves JMS. 2021. Identifying habitats of conservation priority in the São Vicente Submarine Canyon in Southwestern Portugal. Front Mar Sci. 8:672850.
  • Poliseno A, Altuna A, Cerrano C, Wörheide G, Vargas S. 2017. Historical biogeography and mitogenomics of two endemic Mediterranean gorgonians (Holaxonia, Plexauridae). Org Divers Evol. 17(2):365–373.
  • Quattrini AM, Herrera S, Adams JM, Grinyó J, Louise AA, Shuler A, Wirshing HH, Cordes EE, McFadden CS. 2022. Phylogeography of Paramuricea: the role of depth and water mass in the evolution and distribution of deep-sea corals. Front Mar Sci. 9:849402.
  • Suyama M, Torrents D, Bork P. 2006. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res. 34(Web Server issue):W609–W612.
  • Thoma J. 2013. [Molecular and morphological diversity of sea fans with emphasis on deep-sea octocorals of the order Alcyonacea Lamouroux, 1812] [PhD dissertation]. Lafayette (LA): University of Louisiana Lafayette.
  • Walting L, France SC, Pante E, Simpson A. 2011. Chapter 2: biology of deep-water octocorals. In: Lesser MP, editors. Advances in marine biology. Vol. 60. London: Elsevier Ltd; p. 41–122.