The complete chloroplast genome of Crataegus scabrifolia (Franch.) Rehd (Rosaceae), a medicinal and edible plant in Southwest China

References

• Beier S, Thiel T, Münch T, Scholz U, Mascher M. 2017. MISA-web: a web server for microsatellite prediction. Bioinformatics. 33(16):2583–2585.
   PubMed Web of Science ®Google Scholar
• Boby N, Abbas MA, Lee EB, Im ZE, Hsu WH, Park SC. 2021. Protective effect of Pyrus ussuriensis Maxim. extract against ethanol-induced gastritis in rats. Antioxidants. 10(3):439.
   Web of Science ®Google Scholar
• Cha DH, Powell THQ, Feder JL, Linn CE.. 2018. Identification of a new blend of host fruit volatiles from Red Downy hawthorn, Crataegus mollis, Attractive to Rhagoletis pomonella Flies from the Northeastern United States. J Chem Ecol. 44(7-8):671–680.
   PubMed Web of Science ®Google Scholar
• Cui Y, Du K, Hou S, Yang R, Qi L, Li J, Chang Y. 2022. A comprehensive strategy integrating metabolomics with multiple chemometric for discovery of function related active markers for assessment of foodstuffs: a case of hawthorn (Crataegus cuneata) fruits. Food Chem. 383:132464.
   PubMed Web of Science ®Google Scholar
• Dahmer S, Scott E. 2010. Health effects of hawthorn (complementary and alternative medicine). Am Fam Physician. 81(4):465–468.
   PubMed Web of Science ®Google Scholar
• Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small amounts of fresh leaf material. Photochem. Bull. 19:11–15.
   Google Scholar
• Guo C, Wang Y, Zhang S, Zhang X, Du Z, Li M, Ding K. 2021. Crataegus pinnatifida polysaccharide alleviates colitis via modulation of gut microbiota and SCFAs metabolism. Int J Biol Macromol. 181:357–368.
   PubMed Web of Science ®Google Scholar
• Hong SY, Lansky E, Kang SS, Yang M. 2021. A review of pears (Pyrus spp.), ancient functional food for modern times. BMC Complement Med Ther. 21(1):219.
   PubMedGoogle Scholar
• Hu G, Zheng S, Pan Q, Dong N. 2021. The complete chloroplast genome of Crataegus hupehensis Sarg. (Rosaceae), a medicinal and edible plant in China. Mitochondrial DNA Part B 6(2):315–317.
   PubMed Web of Science ®Google Scholar
• Jin JJ, Yu WB, Yang JB, Song Y, DePamphilis CW, Yi TS, Li DZ. 2020. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21(1):1–31.
   Web of Science ®Google Scholar
• Jurikova T, Mlcek J, Skrovankova S, Sumczynski D, Sochor J, Hlavacova I, Snopek L, Orsavova J. 2017. Fruits of Black Chokeberry Aronia melanocarpa in the prevention of chronic diseases. Molecules. 22(6):944.
   PubMed Web of Science ®Google Scholar
• Jurikova T, Sochor J, Rop O, Mlcek J, Balla S, Szekeres L, Adam V, Kizek R. 2012. Polyphenolic profile and biological activity of Chinese hawthorn (Crataegus pinnatifida BUNGE) fruits. Molecules. 17(12):14490–14509.
   PubMed Web of Science ®Google Scholar
• Katayama H, Uematsu C. 2005. Structural analysis of chloroplast DNA in Prunus (Rosaceae): evolution, genetic diversity and unequal mutations. Theor Appl Genet. 111(7):1430–1439.
   PubMed Web of Science ®Google Scholar
• Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
   PubMed Web of Science ®Google Scholar
• Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649.
   PubMed Web of Science ®Google Scholar
• Kim E, Jang E, Lee JH. 2022. Potential roles and key mechanisms of hawthorn extract against various liver diseases. Nutrients. 14(4):867.
   PubMed Web of Science ®Google Scholar
• Kim KJ, Lee HL. 2004. Complete chloroplast genome sequences from Korean ginseng (Panax schinseng Nees) and comparative analysis of sequence evolution among 17 vascular plants. DNA Res. 11(4):247–261.
   PubMed Web of Science ®Google Scholar
• Kuang D-Y, Wu H, Wang Y-L, Gao L-M, Zhang S-Z, Lu L. 2011. Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics. Genome. 54(8):663–673.
   PubMed Web of Science ®Google Scholar
• Kurtz S, Choudhuri JV, Ohlebusch E, Schleiermacher C, Stoye J, Giegerich R. 2001. REPuter: the manifold applications of repeat analysis on a genomic scale. Nucleic Acids Res. 29(22):4633–4642.
   PubMed Web of Science ®Google Scholar
• Li Y, Zhang J, Wang S, Zhang Y, Yang M. 2021. The distribution and origins of Pyrus hopeiensis – "Wild plant with tiny population”. Front Plant Sci. 12:668796.
   PubMed Web of Science ®Google Scholar
• Li J, Zhu K, Wang Q, Chen X. 2021. Genome size variation and karyotype diversity in eight taxa of Sorbus sensustricto (Rosaceae) from China. Comp Cytogenet. 15(2):137–148.
   PubMed Web of Science ®Google Scholar
• Lu Y, Wang X, Wu Y, Wang Z, Zhou N, Li J, Shang X, Lin P. 2022. Chemical characterization of the antioxidant and α-glucosidase inhibitory active fraction of Malus transitoria leaves. Food Chem. 386:132863.
   PubMed Web of Science ®Google Scholar
• Ma JM, Liu SR, Shi ZM, Zhang YD, Chen BY. 2007. Quantitative analysis of different restoration stages during natural succession processes of subalpine dark brown coniferous forests in western Sichuan, China. Ying Yong Sheng Tai Xue Bao. 18(8):1695–1701.
   PubMedGoogle Scholar
• Martinelli F, Perrone A, Yousefi S, Papini A, Castiglione S, Guarino F, Cicatelli A, Aelaei M, Arad N, Gholami M, et al. 2021. Botanical, phytochemical, anti-microbial and pharmaceutical characteristics of hawthorn (Crataegus monogyna Jacq.), Rosaceae. Molecules. 26(23):7266.
   PubMed Web of Science ®Google Scholar
• Nguyen QTN, Fang M, Zhang M, Do NQ, Kim M, Zheng SD, Hwang E, Yi TH. 2021. Crataegus laevigata suppresses LPS-induced oxidative stress during inflammatory response in human keratinocytes by regulating the MAPKs/AP-1, NFκB, and NFAT signaling pathways. Molecules. 26(4):869.
   PubMed Web of Science ®Google Scholar
• Pang X, Wang M, Wang SY, Zhang J, Du YP, Zhao Y, Zheng XH, Ma BP. 2021. Phenolic compounds from the leaves of Crataegus pinnatifida Bge. var. major N.E.Br. And their lipid-lowering effects. Bioorg Med Chem Lett. 47:128211.
   PubMed Web of Science ®Google Scholar
• Qian J, Song J, Gao H, Zhu Y, Xu J, Pang X, Yao H, Sun C, Li X, Li C, et al. 2013. The complete chloroplast genome sequence of the medicinal plant Salvia miltiorrhiza. PLOS One. 8(2):e57607.
   PubMed Web of Science ®Google Scholar
• Sharma R, Jindal R, Faggio C. 2021. Cassia fistula ameliorates chronic toxicity of cypermethrin in Catla catla. Comp Biochem Physiol C Toxicol Pharmacol. 248:109113.
   PubMed Web of Science ®Google Scholar
• Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30(9):1312–1313.
   PubMed Web of Science ®Google Scholar
• Taheri R, Connolly BA, Brand MH, Bolling BW. 2013. Underutilized chokeberry (Aronia melanocarpa, Aronia arbutifolia, Aronia prunifolia) accessions are rich sources of anthocyanins, flavonoids, hydroxycinnamic acids, and proanthocyanidins. J Agric Food Chem. 61(36):8581–8588.
   PubMed Web of Science ®Google Scholar
• Tan J, Wang Y, Wu W, Li Y, Zhao W, Liao W, Fan Q, Liao B. 2020. The complete genome sequence of Sorbus insignis (Rosaceae: Amygdaloideae), an epiphytic shrub in this genus. Mitochondrial DNA Part B 5(3):3239–3240.
   PubMedGoogle Scholar
• Terakami S, Matsumura Y, Kurita K, Kanamori H, Katayose Y, Yamamoto T, Katayama H.,. 2012. Complete sequence of the chloroplast genome from pear (Pyrus pyrifolia): genome structure and comparative analysis. Tree Genet Genomes. 8(4):841–854.
   Web of Science ®Google Scholar
• Wang J, Xiong X, Feng B. 2013. Effect of crataegus usage in cardiovascular disease prevention: an evidence-based approach. Evid Based Complement Alternat Med. 2013:149363.
   PubMed Web of Science ®Google Scholar
• Wang GM, Yin H, Qiao X, Tan X, Gu C, Wang BH, Cheng R, Wang YZ, Zhang SL. 2016. F-box genes: genome-wide expansion, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri). Plant Sci. 253:164–175.
   PubMed Web of Science ®Google Scholar
• Wu ZY. 1974. Crataegus scabrifolia. Flora Reipublicae Popularis Sinicae. Beijing : science Press. 36(1):p. 197.
   Google Scholar
• Yang H, Li Y, Jin Y, Kan L, Shen C, Malladi A, Nambeesan S, Xu Y, Dong C. 2020. Transcriptome analysis of Pyrus betulaefolia seedling root responses to short-term potassium deficiency. IJMS. 21(22):8857.
   Google Scholar
• Yang H, Wang L, Chen H, Jiang M, Wu W, Liu S, Wang J, Liu C. 2021. Phylogenetic analysis and development of molecular markers for five medicinal Alpinia species based on complete plastome sequences. BMC Plant Biol. 21(1):1–16.
   PubMed Web of Science ®Google Scholar
• Zhang J, Huang H, Qu C, Meng X, Meng F, Yao X, Wu J, Guo X, Han B, Xing S. 2021. Comprehensive analysis of chloroplast genome of Albizia julibrissin Durazz. (Leguminosae sp.). Planta. 255(1):26.
   PubMed Web of Science ®Google Scholar
• Zheng S, Song H, Dong N. 2021. The complete chloroplast genome of Crataegus bretschneideri Schneid. (Rosaceae). Mitochondrial DNA Part B. 6(12):3322–3324.
   PubMed Web of Science ®Google Scholar
• Zhu QJ, Lang LJ, Jiang B, Shen Y, Wang Y, Xiao CJ. 2021. Chemical constituents of the fruits of wild Crataegus scabrifolia. J Dali Univ. 6(04):7–9.
   Google Scholar
• Żurek N, Karatsai O, Rędowicz MJ, Kapusta IT. 2021. Polyphenolic compounds of Crataegus berry, leaf, and flower extracts affect viability and invasive potential of human glioblastoma cells. Molecules. 26(9):2656.
   PubMed Web of Science ®Google Scholar