Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 8, 2023 - Issue 1
Submit an article Journal homepage
640
Views
1
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The complete chloroplast genome sequence of Camellia sinensis var. sinensis cultivar ‘FuDingDaBaiCha’

Dahe QiaoTea Research Institute, Guizhou Academy of Agricultural Sciences, Guiyang, ChinaCorrespondence[email protected]
ORCID Iconhttps://orcid.org/0000-0002-0583-0316View further author information
ORCID Icon,
Chun YangTea Research Institute, Guizhou Academy of Agricultural Sciences, Guiyang, ChinaView further author information
&
Yan GuoTea Research Institute, Guizhou Academy of Agricultural Sciences, Guiyang, ChinaView further author information
Pages 100-104 | Received 26 Sep 2022, Accepted 18 Dec 2022, Published online: 08 Jan 2023

References

  • Beier S, Thiel T, Münch T, Scholz U, Mascher M. 2017. MISA-web: a web server for microsatellite prediction. Bioinformatics. 33(16):2583–2585.
  • Brody H. 2019. Tea. Nature. 566(7742):S1.
  • Dong M, Liu S, Xu Z, Hu Z, Ku W, Wu L. 2018. The complete chloroplast genome of an economic plant, Camellia sinensis cultivar Anhua, China. Mitochondrial DNA B Resour. 3(2):558–559.
  • Fan L, Li L, Hu Y, Huang Y, Hong Y, Zhang B. 2022. Complete chloroplast genomes of five classical Wuyi tea varieties (Camellia sinensis, Synonym: Thea bohea L.), the most famous Oolong tea in China. Mitochondrial DNA B Resour. 7(4):655–657.
  • Hao WJ, Wang S, Yao M, Ma JQ, Xu YX, Chen L. 2019. The complete chloroplast genome of an albino tea, Camellia sinensis cultivar 'Baiye 1'. Mitochondrial DNA B Resour. 4(2):3143–3144.
  • Hao WJ, Ma JQ, Ma C, Jin J, Chen L. 2019. The complete chloroplast genome sequence of Camellia tachangensis F. C. Zhang (Theaceae). Mitochondrial DNA B Resour. 4(2):3344–3345.
  • Huang H, Shi C, Liu Y, Mao SY, Gao LZ. 2014. Thirteen Camellia chloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships. BMC Evol Biol. 14:151.
  • Lapidus A, Antipov D, Bankevich A, Gurevich A, Korobeynikov A, Nurk S, Prjibelski A, Safonova Y, Vasilinetc I, Pevzner PA. 2014. New frontiers of genome assembly with SPAdes 3.0.
  • Lee DJ, Kim CK, Lee TH, Lee SJ, Moon DG, Kwon YH, Cho JY. 2020. The complete chloroplast genome sequence of economical standard tea plant, Camellia sinensis L. cultivar Sangmok, in Korea. Mitochondrial DNA Part B. 5(3):2835–2836.
  • Li L, Hu Y, Wu L, Chen R, Luo S. 2021. The complete chloroplast genome sequence of Camellia sinensis cv. Dahongpao: a most famous variety of Wuyi tea (Synonym: Thea bohea L.). Mitochondrial DNA B Resour. 6(1):3–5.
  • Nakamura T, Yamada K, Tomii K, Katoh K. 2018. Parallelization of MAFFT for large-scale multiple sequence alignments. Bioinformatics. 34(14):2490–2492.
  • Niu S, Song Q, Koiwa H, Qiao D, Zhao D, Chen Z, Liu X, Wen X. 2019. Genetic diversity, linkage disequilibrium, and population structure analysis of the tea plant (Camellia sinensis) from an origin center, Guizhou plateau, using genome-wide SNPs developed by genotyping-by-sequencing. BMC Plant Biol. 19(1):328.
  • Rozas J, Ferrer-Mata A, Sánchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, Sánchez-Gracia A. 2017. DnaSP 6: DNA sequence polymorphism analysis of large data sets. Mol Biol Evol. 34(12):3299–3302.
  • Shi L, Chen H, Jiang M, Wang L, Wu X, Huang L, Liu C. 2019. CPGAVAS2, an integrated plastome sequence annotator and analyzer. Nucleic Acids Res. 47(W1):W65–W73.
  • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol. 30(12):2725–2729.
  • Tan LQ, Peng M, Xu LY, Wang LY, Chen SX, Zou Y, Qi GN, Cheng H. 2015. Fingerprinting 128 Chinese clonal tea cultivars using SSR markers provides new insights into their pedigree relationships. Tree Genet Genomes. 11(5):1–12.
  • Wang X, Feng H, Chang Y, Ma C, Wang L, Hao X, Li A, Cheng H, Wang L, Cui P, et al. 2020. Population sequencing enhances understanding of tea plant evolution. Nat Commun. 11(1):4447.
  • Wang X, Wang L, Hao X, Zeng J, Yang Y. 2019. 40 years of tea genetic breeding in China. China Tea. 41(5):1–6.
  • Wu Q, Tong W, Zhao H, Ge R, Li R, Huang J, Li F, Wang Y, Mallano AI, Deng W, et al. 2022. Comparative transcriptomic analysis unveils the deep phylogeny and secondary metabolite evolution of 116 Camellia plants. Plant J. 111(2):406–421.
  • Yan M, Liu K, Wang M, Lv Y, Zhang Q. 2021. Complete chloroplast genome of Camellia sinensis cv. Xinyang 10 and its phylogenetic evolution. J Tea Sci. 41(6):777–788.
  • Yang C, Qiao D, Guo Y, Chen J, Chen Z. 2022. The complete chloroplast genome sequence of Camellia sinensis cultivar 'Qiancha1' from Guizhou Province, China. Mitochondrial DNA B Resour. 7(2):404–405.
  • Yang JB, Yang SX, Li HT, Yang J, Li DZ. 2013. Comparative chloroplast genomes of camellia species. PLOS One. 8(8):e73053.
  • Ye XQ, Zhao ZH, Zhu QW, Wang YY, Lin ZX, Ye CY, Fan LJ, Xu HR. 2014. Entire chloroplast genome sequence of tea (Camellia sinensis cv. Longjing43): a molecular phylogenetic analysis. J Zhejiang Univ. 40(4):404–412.
  • Zhang W, Zhang Y, Qiu H, Guo Y, Wan H, Zhang X, Scossa F, Alseekh S, Zhang Q, Wang P, et al. 2020. Genome assembly of wild tea tree DASZ reveals pedigree and selection history of tea varieties. Nat Commun. 11(1):3719.
  • Zhang F, Li W, Gao CW, Zhang D, Gao LZ. 2019. Deciphering tea tree chloroplast and mitochondrial genomes of Camellia sinensis var. assamica. Sci Data. 6(1):209.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.