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Mitochondrial DNA Part B
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Volume 8, 2023 - Issue 1
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Plastome Announcement

The complete chloroplast genome of an endangered plant Artemisia borotalensis (Asteraceae) and phylogenetic analysis

Guang-Zhao Jina State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China;b The Herbarium of Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China;c University of Chinese Academy of Sciences, Beijing, ChinaView further author information
,
Zhi-bin Wena State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China;b The Herbarium of Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, ChinaView further author information
,
Feng Songd Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, ChinaView further author information
&
Ying Fenga State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China;b The Herbarium of Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, ChinaCorrespondence[email protected]
ORCID Iconhttps://orcid.org/0000-0002-0817-6751View further author information
ORCID Icon
Pages 145-148 | Received 29 Aug 2022, Accepted 25 Dec 2022, Published online: 15 Jan 2023

References

  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120.
  • Darriba D, Taboada GL, Doallo R, Posada D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods. 9(8):772–772.
  • Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
  • Duffy PE, Mutabingwa TK. 2006. Artemisinin combination therapies. Lancet. 367(9528):2037–2039.
  • Jin J-J, Yu W-B, Yang J-B, Song Y, dePamphilis CW, Yi T-S, Li D-Z., 2020. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21(1):31.
  • Katoh K, Standley DM. 2013. MAFFT Multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649.
  • Kim G-B, Lim CE, Kim J-S, Kim K, Lee JH, Yu H-J, Mun J-H., 2020. Comparative chloroplast genome analysis of Artemisia (Asteraceae) in East Asia: insights into evolutionary divergence and phylogenomic implications. BMC Genomics. 21(1):415.
  • Kim HT, Kim JS. 2020. The complete chloroplast genome sequence of Ajania pacifica (Nakai) Bremer & Humphries. Mitochondrial DNA Part B. 5(3):2399–2400.
  • Lee YS, Park JY, Kim J-K, Lee HO, Park H-S, Lee S-C, Kang JH, Lee TJ, Sung SH, Yang T-J, et al. 2016. Complete chloroplast genome sequence of Artemisia fukudo Makino (Asteraceae). Mitochondrial DNA Part B. 1(1):376–377.
  • Lee YS, Woo S, Kim J-K, Park JY, Izzah NK, Park H-S, Kang JH, Lee TJ, Sung SH, Kang KB, et al. 2022. Genetic and chemical markers for authentication of three Artemisia species: A. capillaris, A. gmelinii, and A. fukudo. PLoS One. 17(3):e0264576.
  • Li X, He JH, Lian YX, Li FL, Suo JH, Jin GQ. 2020. The complete chloroplast genome sequence of Artemisia ordosica. Mitochondrial DNA Part B. 5(3):2180–2181.
  • Ling YR, Humphries CJ, Gilbert MG. 2011. Seriphidium (Besser ex Lessing) Fourreau. In: Wu ZY, Raven PH, editors. Flora of China, vol. 20–21. Beijing: Science Press. p. 737–747.
  • Liu Y, Huo N, Dong L, Wang Y, Zhang S, Young HA, Feng X, Gu YQ., 2013. Complete chloroplast genome sequences of Mongolia medicine Artemisia frigida and phylogenetic relationships with other plants. PLoS One. 8(2):e57533.
  • Lohse M, Drechsel O, Bock R. 2007. OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes. Curr Genet. 52(5–6):267–274.
  • Malik S, Vitales D, Hayat MQ, Korobkov AA, Garnatje T, Vallès J. 2017. Phylogeny and biogeography of Artemisia subgenus Seriphidium (Asteraceae: Anthemideae). Taxon. 66(4):934–952.
  • Miller MA, Pfeiffer W, Schwartz T. 2010. Creating the CIPRES science gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop (GCE) 14 November 2010. New Orleans, LA: 1-8.
  • Poljakov PP. 1954. Species novae generis Artemisia subgeneris Seriphidium (Bess.) Rouy. Bot. Mater. Gerb. Bot. Inst. Komarova Akad. Nauk S.S.S.R. 16: 425.
  • Shahzadi I, Mehmood F, Ali Z, Ahmed I, Mirza, B, Abdullah  . 2020. Chloroplast genome sequences of Artemisia maritima and Artemisia absinthium: comparative analyses, mutational hotspots in genus Artemisia and phylogeny in family Asteraceae. Genomics. 112(2):1454–1463.
  • Song S, Zhu M, Wang Y, Huang W, He J, Zhang R. 2012. Essential oil useful for insecticide for killing homoptera insect i.e. cotton aphid and psyllid, obtained by steam distilling aerial part of Seriphidium borotalense. Chinese: CN113729036-A; CN113729036-B.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30(9):1312–1313.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S., 2017. GeSeq – versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–W11.
  • Vallès J, Garcia S, Hidalgo O, Martín J, Pellicer J, Sanz M, et al. 2011. Biology, Genome Evolution, Biotechnological Issues and Research Including Applied Perspectives in Artemisia (Asteraceae). In: Kader J, Delseny M, editors. Advances in Botanical Research Vol 60, vol. 60. London: Academic Press. p. 349–419.

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