Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 8, 2023 - Issue 1
Submit an article Journal homepage
520
Views
0
CrossRef citations to date
0
Altmetric
Plastome Announcement

The complete chloroplast genome of Prunus phaeosticta (Hance) Maxim. (Rosaceae) and its phylogenetic implications

Jia-Qi Wua Flower, Forestry and Fruit Institute, Jinhua Academy of Agricultural Sciences, Jinhua, ChinaView further author information
,
Yi Wanga Flower, Forestry and Fruit Institute, Jinhua Academy of Agricultural Sciences, Jinhua, ChinaView further author information
,
Ping Suna Flower, Forestry and Fruit Institute, Jinhua Academy of Agricultural Sciences, Jinhua, ChinaView further author information
,
Zhong-Shuai Sunb Zhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, Taizhou University, Taizhou, ChinaView further author information
&
Jian-Sheng Shena Flower, Forestry and Fruit Institute, Jinhua Academy of Agricultural Sciences, Jinhua, ChinaCorrespondence[email protected]
View further author information
Pages 136-140 | Received 24 Aug 2022, Accepted 26 Dec 2022, Published online: 15 Jan 2023

References

  • Chin SW, Shaw J, Haberle R, Wen J, Potter D. 2014. Diversification of almonds, peaches, plums and cherries – molecular systematics and biogeographic history of Prunus (Rosaceae). Mol Phylogenet Evol. 76:34–48.
  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18.
  • Do HDK, Kim C, Chase MW, Kim JH. 2020. Implications of plastome evolution in the true lilies (monocot order Liliales). Mol Phylogenet Evol. 148:106818.
  • Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
  • Gitzendanner MA, Soltis PS, Yi TS, Li DZ, Soltis DE. 2018. Plastome phylogenetics: 30 years of inferences into plant evolution. Adv Bot Res. 85:293–313.
  • Jin L, Liu JJ, Xiao TW, Li QM, Lin L, Shao XN, Ma CX, Li BH, Mi XC, Qiao XJ, et al. 2021. Community phylogenetics require phylogenies reconstructed from plastid genomes. Authorea. doi: 10.22541/au.161834751.14170237/v1.
  • Katoh K, Kuma KI, Toh H, Miyata T. 2005. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 33(2):511–518.
  • Li YL, Reed J, Xu YQ, Qu DH, Sun ZS. 2021. Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America. Mitochondrial DNA B Resour. 6(2):480–482.
  • Liu XL, Wen J, Nie ZL, Johnson G, Liang ZS, Chang ZY. 2013. Polyphyly of the Padus group of Prunus (Rosaceae) and the evolution of biogeographic disjunctions between eastern Asia and eastern North America. J Plant Res. 126(3):351–361.
  • Luan A, Gao A, He J, Bi G, He Y. 2018. Characterization of the complete chloroplast genome of black cherry (Prunus serotina Ehrh.). Conservation Genet Resour. 10(3):367–370.
  • Miller MA, Pfeiffer W, Schwartz T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Gateway Comput Environ Workshop. 14:1–8.
  • Shi S, Li J, Sun J, Yu J, Zhou S. 2013. Phylogeny and classification of Prunus sensu lato (Rosaceae). J Integr Plant Biol. 55(11):1069–1079.
  • Su N, Liu BB, Wang JR, Tong RC, Ren C, Chang ZY, Zhao L, Potter D, Wen J. 2021. On the species delimitation of the Maddenia group of Prunus (Rosaceae): evidence from plastome and nuclear sequences and morphology. Front Plant Sci. 12:743643.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq-versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–W11.
  • Wang JR, Guo YH, Yang JQ, Tong RC, Cao Z, Zhao L. 2021. Complete plastome sequence of Prunus hypoxantha (Rosaceae), a species endemic in west of China. Mitochondrial DNA B Resour. 6(1):234–235.
  • Wen J, Berggren ST, Lee CH, Ickert-Bond S, Yi TS, Yoo KO, Xie L, Shaw J, Potter D. 2008. Phylogenetic inferences in Prunus (Rosaceae) using chloroplast ndhF and nuclear ribosomal ITS sequences. J Syst Evol. 46(3):322–332.
  • Xu X, Wen J, Wang W, Zheng W. 2018. The complete chloroplast genome of the threatened Prunus cerasoides, a rare winter blooming cherry in the Himalayan region. Conservat Genet Resour. 10(3):499–502.
  • Zhao L, Jiang XW, Zuo Y, Liu XL, Chin SW, Haberle R, Potter D, Chang ZY, Wen J. 2016. Multiple events of allopolyploidy in the evolution of the racemose lineages in Prunus (Rosaceae) based on integrated evidence from nuclear and plastid data. PLoS One. 11(6):e0157123.
  • Zou P, Dai S, Wang W, Liu G. 2019. The complete chloroplast genome of Laurocerasus zippeliana (Rosaceae). Mitochondrial DNA B Resour. 4(2):3264–3265.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.