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Mitogenome Announcement

The complete mitochondrial genome of the South African snoek Thyrsites atun (Euphrasén, 1791) (Perciformes, Gempylidae)

ORCID Icon, ORCID Icon & ORCID Icon
Pages 288-291 | Received 07 Oct 2022, Accepted 03 Feb 2023, Published online: 20 Feb 2023

References

  • Beckett HT, Giles S, Johanson Z, Friedman M. 2018. Morphology and phylogenetic relationships of fossil snake mackerels and cutlassfishes (Trichiuroidea) from the Eocene (Ypresian) London clay formation. Pap Palaeontol. 4(4):577–603.
  • Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319.
  • Bouckaert RR, Drummond AJ. 2017. bModelTest: Bayesian phylogenetic site model averaging and model comparison. BMC Evol Biol. 17(1):1–11.
  • Bustamante C, Ovenden JR. 2016. The complete validated mitochondrial genome of the silver gemfish Rexea solandri (Cuvier, 1832) (Perciformes: Gempylidae). Mitochondrial DNA Part A DNA Mapp Seq Anal. 27(1):405–406.
  • Carpenter K, Collette B, Russo J. 1995. Unstable and stable classifications of Scombroid fishes. Bull Mar Sci. 56:379–405.
  • Crawford RJM, De Villiers G. 1985. Snoek and their prey – interrelationships in the Benguela upwelling system. S Afr J Sci. 81:91–97.
  • Friedman M, Feilich KL, Beckett HT, Alfaro ME, Faircloth BC, Černý D, Miya M, Near TJ, Harrington RC. 2019. A phylogenomic framework for pelagiarian fishes (Acanthomorpha: Percomorpha) highlights mosaic radiation in the open ocean. Proceedings of the Royal Society B: Biological Sciences 286: p. 1–59.
  • Griffiths MH. 2002. Life history of South African snoek, Thyrsites atun (Pisces: Gempylidae): a pelagic predator of the Benguela ecosystem. Fish Bull. 100:690–710.
  • Griffiths MH. 2003. Stock structure of snoek Thyrsites atun in the Benguela: a new hypothesis. Afr J Mar Sci. 25(1):383–386.
  • Hüne M, Oyarzún PA, Reyes P, Rivera G, Montecinos M. 2021. Phylogeographic analysis of Thyrsites atun (Perciformes: Gempylidae) reveals connectivity between fish from South Africa and Chile. Mar Biol Res. 17(4):401–413.
  • Hutchings K, Lamberth SJ. 2002. Bycatch in the gillnet and beach-seine fisheries in the Western Cape, South Africa, with implications for management. S Afr J Mar Sci. 7615:227–241.
  • Iwasaki W, Fukunaga T, Isagozawa R, Yamada K, Maeda Y, Satoh TP, Sado T, Mabuchi K, Takeshima H, Miya M, et al. 2013. Mitofish and mitoannotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline. Mol Biol Evol. 30(11):2531–2540.
  • Johnson GD. 1986. Scombroid phylogeny: an alternative hypothesis. Bull Mar Sci. 39:1–41.
  • Kailola PJ, Williams MJ, Stewart PC, Reichelt RE, McNee A, Grieve C. 1993. Australian fisheries resources. Bureau of Resources Sciences, Department of Primary Industries and Energy and the Fisheries Research and Development Corporation, Canberra, Australia. p. 341–343.
  • Lavoué S, Miya M, Inoue JG, Saitoh K, Ishiguro NB, Nishida M. 2005. Molecular systematics of the gonorynchiform fishes (Teleostei) based on whole mitogenome sequences: implications for higher-level relationships within the Otocephala. Mol Phylogenet Evol. 37(1):165–177.
  • Li Z, Qi J, Ran Q, Xu Y, Yu H, Xu P, Zhang J. 2020. The complete mitochondrial genome sequence of snake mackerels Paradiplospinus antarcticus (Scombroidei: Gempylidae). Mitochondrial DNA Part B: Resour. 5(3):2377–2378.
  • Matsubara K, Iwai T. 1952. Studies on some Japanese fishes of the family Gempylidae. Pac Sci. 6:193–212.
  • Miya M, Nishida M. 2015. The mitogenomic contributions to molecular phylogenetics and evolution of fishes: a 15-year retrospect. Ichthyol Res. 62(1):29–71.
  • Miya M, Friedman M, Satoh TP, Takeshima H, Sado T, Iwasaki W, Yamanoue Y, Nakatani M, Mabuchi K, Inoue JG, et al. 2013. Evolutionary origin of the Scombridae (Tunas and Mackerels): Members of a Paleogene adaptive radiation with 14 other pelagic fish families. PLOS One. 8(9):e73535.
  • Monsch KA. 2000. The phylogeny of the Scombroid fishes. Unpublished Ph.D. dissertation, University of Bristol, United Kingdom.
  • Mukundan LP, Sukumaran S, Sebastian W, Gopalakrishnan A. 2020. Characterization of the whole mitogenome of Largehead hairtail Trichiurus lepturus (Trichiuridae): insights into special characteristics. Biochem Genet. 58(3):430–451.
  • Nakamura I. 1993. FAO species catalog vol. 15. Snake mackerels and cutlassfishes of the world (families Gempylidae and Trichiuridae). FAO Fish Synop. 125:30–32.
  • Nelson JS. 2006. Fishes of the world.Hoboken, New Jersey: John Wiley & Sons, Inc.; 431.
  • Prjibelski A, Antipov D, Meleshko D, Lapidus A, Korobeynikov A. 2020. Using SPAdes de novo assembler. Curr Protocn Bioinformatics. 70(1):1–29.
  • Ronquist F, Teslenko M, Van Der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. Mrbayes 3.2: efficient bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61(3):539–542.
  • Russo JL. 1983. [Interrelationships of the gempylid fishes (Teleostei, Scombroidei)]. [Unpubl Ph.D. Dissertation]. Washington, D.C: George Washington Univ.
  • Sambrook J, Russell D. 2001. Molecular cloning: a laboratory manual 3rd edition. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.