Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 8, 2023 - Issue 2
Submit an article Journal homepage
560
Views
0
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis

Marylin Migaa Department of Biosciences, Faculty of Science, Universiti Teknologi Malaysia, Johor, MalaysiaORCID Iconhttps://orcid.org/0000-0002-6968-3765View further author information
ORCID Icon,
Puteri Nur Syahzanani Jaharia Department of Biosciences, Faculty of Science, Universiti Teknologi Malaysia, Johor, MalaysiaORCID Iconhttps://orcid.org/0000-0002-5485-6088View further author information
ORCID Icon,
Sivachandran Parimannanb Centre of Excellence for Omics-Driven Computational Biodiscovery (COMBio), Faculty of Applied Sciences, AIMST University, Bedong, Kedah, MalaysiaORCID Iconhttps://orcid.org/0000-0002-0101-1858View further author information
ORCID Icon,
Heera Rajandasb Centre of Excellence for Omics-Driven Computational Biodiscovery (COMBio), Faculty of Applied Sciences, AIMST University, Bedong, Kedah, MalaysiaORCID Iconhttps://orcid.org/0000-0001-5963-3441View further author information
ORCID Icon,
Muhammad Abu Bakar Latiffc Environmental Management and Conservation Research Unit (ENCORE), Faculty of Applied Sciences and Technology (FAST), Universiti Tun Hussein Onn Malaysia, Pagoh Higher Education Hub, Muar, Johor, MalaysiaORCID Iconhttps://orcid.org/0000-0001-9551-8571View further author information
ORCID Icon,
Yap Jing Weid Centre of Research for Sustainable Uses of Natural Resources (SUNR), Faculty of Applied Sciences and Technology (FAST), Universiti Tun Hussein Onn Malaysia, Pagoh Higher Education Hub, Muar, Johor, MalaysiaORCID Iconhttps://orcid.org/0000-0002-3706-5954View further author information
ORCID Icon,
Mohd Shahir Shamsira Department of Biosciences, Faculty of Science, Universiti Teknologi Malaysia, Johor, MalaysiaORCID Iconhttps://orcid.org/0000-0002-1191-1294View further author information
ORCID Icon &
Faezah Mohd Salleha Department of Biosciences, Faculty of Science, Universiti Teknologi Malaysia, Johor, Malaysia;b Centre of Excellence for Omics-Driven Computational Biodiscovery (COMBio), Faculty of Applied Sciences, AIMST University, Bedong, Kedah, Malaysia;d Centre of Research for Sustainable Uses of Natural Resources (SUNR), Faculty of Applied Sciences and Technology (FAST), Universiti Tun Hussein Onn Malaysia, Pagoh Higher Education Hub, Muar, Johor, MalaysiaCorrespondence[email protected]
ORCID Iconhttps://orcid.org/0000-0001-7492-583XView further author information
ORCID Icon show all
Pages 292-296 | Received 30 Sep 2022, Accepted 03 Feb 2023, Published online: 20 Feb 2023

References

  • Abdul Aziz MAA, Mohamed M. 2019. Annotated checklist of odonates (Insecta: Odonata) in Sungai Bantang Recreational Forest, Bekok, Johor, Malaysia. IOP Conf Ser: Earth Environ Sci. 269(1):012002.
  • Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319.
  • Bybee S, Córdoba-Aguilar A, Duryea MC, Futahashi R, Hansson B, Lorenzo-Carballa MO, Schilder R, Stoks R, Suvorov A, Svensson EI, et al. 2016. Odonata (dragonflies and damselflies) as a bridge between ecology and evolutionary genomics. Front Zool. 13(1):1–20.
  • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 17(4):540–552.
  • Chee Yen C, Mohamed Dawood M. 2021. Dragonflies and Damselflies (Odonata) of Kadamaian, Kinabalu Park, Sabah. J Trop Biol Conserv. 18:71–79.
  • Chen MY, Chaw SM, Wang JF, Villanueva RJT, Nuñeza OM, Lin CP. 2015. Mitochondrial genome of a flashwing demoiselle, Vestalis melania from the Philippine Archipelago. Mitochondrial DNA. 26(5):720–721.
  • Cheng YC, Chen MY, Wang JF, Liang AP, Lin CP. 2018. Some mitochondrial genes perform better for damselfly phylogenetics: species- and population-level analyses of four complete mitogenomes of Euphaea sibling species. Syst Entomol. 43(4):702–715.
  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18.
  • Grant JR, Stothard P. 2008. The CGView server: a comparative genomics tool for circular genomes. Nucleic Acids Res. 36(Web Server issue):181–184.
  • Jiang B, Li J, Zhang Y, Sun Y, He S, Yu G, Lv G, Mikolajewski DJ. 2021. Complete mitochondrial genomes of two damselfly species in coenagrionidae and phylogenetic implications. Mitochondrial DNA Part B: Resour. 6(8):2445–2448.
  • Katoh K, Misawa K, Kuma KI, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30(14):3059–3066.
  • Lin CP, Chen MY, Huang JP. 2010. The complete mitochondrial genome and phylogenomics of a damselfly, Euphaea formosa support a basal Odonata within the Pterygota. Gene. 468(1–2):20–29.
  • Lorenzo-Carballa MO, Thompson DJ, Cordero-Rivera A, Watts PC. 2014. Next generation sequencing yields the complete mitochondrial genome of the scarce blue-tailed damselfly, Ischnura pumilio. Mitochondrial DNA. 25(4):247–248.
  • Macher J-N, Drakou K, Papatheodoulou A, Hoorn B v d, Vasquez M. 2020. The mitochondrial genomes of 11 aquatic macroinvertebrate species from Cyprus. Metabarcoding and Metagenomics. 4:91–96.
  • Miga M, Jahari PNS, Vei Siang C, Kamarudin KR, Shamsir MS, Tokiman L, Parimannan S, Rajandas H, Mohamed F, Salleh FM. 2022. The complete mitochondrial genome data of the common Rose butterfly, Pachliopta aristolochiae (Lepidoptera, Papilionoidea, Papilionidae) from Malaysia. Data Brief. 40:107740.
  • Milne I, Bayer M, Cardle L, Shaw P, Stephen G, Wright F, Marshall D. 2009. Tablet-next generation sequence assembly visualization. Bioinformatics. 26(3):401–402.
  • Schubert M, Lindgreen S, Orlando L. 2016. AdapterRemoval v2: rapid adapter trimming, identification, and read merging. BMC Research Notes. 9(88):1–7.
  • Shen J, Cong Q, Grishin N. v 2015. The complete mitochondrial genome of Papilio glaucus and its phylogenetic implications. Meta Gene. 5:68–83.
  • Tamura K, Stecher G, Kumar S. 2021. MEGA11: molecular evolutionary genetics analysis Version 11. Mol Biol Evol. 38(7):3022–3027.
  • Wang LJ, Hsu MH, Wang CH, Chung CH, Sung CH. 2021. The complete mitochondrial genome of Mnais tenuis Oguma, 1913 (Odonata: Calopterygidae) and its phylogenetic implications. Mitochondrial DNA Part B: Resour. 6(5):1648–1649.
  • Waterhouse AM, Procter JB, Martin DMA, Clamp M, Barton GJ. 2009. Jalview Version 2-A multiple sequence alignment editor and analysis workbench. Bioinformatics. 25(9):1189–1191.
  • Xu S, Guan Z, Huang Q, Xu L, Vierstraete A, Dumont HJ, Lin Q. 2018. The mitochondrial genome of Atrocalopteryx melli Ris, 1912 (Zygoptera: Calopterygidae) via ion torrent PGM NGS sequencing. Mitochondrial DNA Part B: Resources. 3(1):115–117.
  • Zhang D, Gao F, Jakovlić I, Zou H, Zhang J, Li WX, Wang GT. 2020. PhyloSuite: an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. Mol Ecol Resour. 20(1):348–355.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.