Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 8, 2023 - Issue 3
Submit an article Journal homepage
543
Views
1
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

First complete mitochondrial genome of the endemic goby, Rhinogobius davidi (Gobiiformes: Gobiidae: Gobionellinae), in China

Lin SongJiangsu Agri-animal Husbandry Vocational College, Taizhou, Jiangsu Province, P. R.ChinaCorrespondence[email protected]
ORCID Iconhttps://orcid.org/0000-0003-3255-158XView further author information
ORCID Icon,
Xiao Jiang ChenJiangsu Agri-animal Husbandry Vocational College, Taizhou, Jiangsu Province, P. R.ChinaORCID Iconhttps://orcid.org/0000-0002-0934-0330View further author information
ORCID Icon,
Yang SongJiangsu Agri-animal Husbandry Vocational College, Taizhou, Jiangsu Province, P. R.ChinaORCID Iconhttps://orcid.org/0009-0008-1048-1334View further author information
ORCID Icon &
Quan WangJiangsu Agri-animal Husbandry Vocational College, Taizhou, Jiangsu Province, P. R.ChinaORCID Iconhttps://orcid.org/0009-0002-5833-3687View further author information
ORCID Icon
Pages 410-413 | Received 11 Aug 2022, Accepted 26 Jan 2023, Published online: 14 Mar 2023

References

  • Barnett R, Larson G. 2012. A phenol-chloroform protocol for extracting DNA from ancient samples. Methods Mol Biol. 840:13–19.
  • Bernt M, Donath A, Juhling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319.
  • Bolger A, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120.
  • Chen IS, Miller PJ. 1998. Redescription of a Chinese freshwater goby, Gobius davidi (Gobiidae), and comparison with Rhinogobius lentiginis. Cybium. 22(3):211–221.
  • Chen XJ, Song L, Liu WZ, Wang Q. 2022. Characteristic and phylogenetic analyses of mitochondrial genome for Rhinogobius filamentosus (Teleostei: Gobiidae: Gobionellinae), an endemic species in China. Mitochondrial DNA B Resour. 7(9):1752–1755.
  • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32(5):1792–1797.
  • Grant JR, Stothard P. 2008. The CGView Server: a comparative genomics tool for circular genomes. Nucleic Acids Res. 36(Web Server issue):W181–W184.
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35(6):1547–1549.
  • Luo F, Huang J, Luo T, Yang J, Wen Y. 2019. Complete mitochondrial genome and phylogenetic analysis of Yunnanilus pulcherrimus (Cypriniformes, Nemacheilidae). Mitochondrial DNA Part B. 4(1):1269–1270.
  • Li F. 2011. Study on classification and distribution of Rhinogobius (Perciformes: Gobiidae) from the Qiantangjiang Basin. [Doctoral dissertation]. Shanghai: Fudan University. https://cdmd.cnki.com.cn/Article/CDMD-10246-1014444614.htm
  • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 25(14):1754–1760.
  • Maeda K, Shinzato C, Koyanagi R, Kunishima T, Kobayashi H, Satoh N, Palla HP. 2021. Two new species of Rhinogobius (Gobiiformes: oxudercidae) from Palawan, Philippines, with their phylogenetic placement. Zootaxa. 5068(1):81–98.
  • Nurk S, Meleshko D, Korobeynikov A, Pevzner PA. 2017. MetaSPAdes: a new versatile metagenomic assembler. Genome Res. 27(5):824–834.
  • Oh J, Kim TW, Kim S. 2016. The complete mitochondrial genome of Chaenogobius gulosus (Gobiidae, Perciformes) from the South Sea, Korea. Mitochondrial DNA A DNA Mapp Seq Anal. 27(6):4207–4208.
  • Song L, Chen XJ, Mao HX, Wang Q. 2022. Characterization and phylogenetic analysis of the complete mitochondrial genome of Rhinogobius wuyanlingensis (Gobiiformes: Gobiidae: Gobionellinae). Mitochondrial DNA B Resour. 7(7):1323–1325.
  • Tan HY, Yang YY, Zhang M, Chen XL. 2020. The complete mitochondrial genome of Rhinogobius duospilus (Gobiidae: Gobionellinae). Mitochondrial DNA B Resour. 5(3):3406–3407.
  • Wang D, Dai CX, Li Q, Li Y, Liu ZZ. 2019. Complete mitochondrial genome and phylogenic analysis of Rhinogobius cliffordpopei (Perciformes, Gobiidae). Mitochondrial DNA B Resour. 4(2):2473–2474.
  • Xie LP, Yang XF, Ma ZH, Yang RB. 2015. Complete mitochondrial genome of Rhinogobius giurinus (Perciformes: Gobiidae: Gobionellinae). Mitochondrial DNA. 26(2):321–322.
  • Yang JQ, Wu HL, Chen IS. 2008. A new species of Rhinogobius (Teleostei: Gobiidae) from the Feiyunjiang basin in Zhejiang Province, China. Ichthyological Research. 55:379–385.
  • Yang CJ, Chen Y, Chen Z, He GH, Zhong ZL, Xue WB. 2020. The next-generation sequencing reveals the complete mitochondrial genome of Rhinogobius formosanus (Perciformes: Gobiidae). Mitochondrial DNA B Resour. 5(3):2673–2674.
  • Zhang FB, Shen YJ. 2019. Characterization of the complete mitochondrial genome of Rhinogobius leavelli (Perciformes: Gobiidae: Gobionellinae) and its phylogenetic analysis for Gobionellinae. Biologia. 74:493–499.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.