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Mitochondrial DNA Part B
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Volume 8, 2023 - Issue 3
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Mitogenome Announcement

The complete chloroplast genome of Nymphaea atrans (Surrey Wilfrid Laurance Jacobs, 1992: Nymphaeaceae)

Qian WeiXi’an Botanical Garden of Shaanxi Province, Institute of Botany of Shaanxi Province, Shaanxi Engineering Research Centre for Conservation and Utilization of Botanical Resources, Xi’an, Shaanxi, Shaanxi Province, ChinaView further author information
,
An-cheng LiuXi’an Botanical Garden of Shaanxi Province, Institute of Botany of Shaanxi Province, Shaanxi Engineering Research Centre for Conservation and Utilization of Botanical Resources, Xi’an, Shaanxi, Shaanxi Province, ChinaView further author information
,
Chen ChenXi’an Botanical Garden of Shaanxi Province, Institute of Botany of Shaanxi Province, Shaanxi Engineering Research Centre for Conservation and Utilization of Botanical Resources, Xi’an, Shaanxi, Shaanxi Province, ChinaView further author information
,
Yuan LuXi’an Botanical Garden of Shaanxi Province, Institute of Botany of Shaanxi Province, Shaanxi Engineering Research Centre for Conservation and Utilization of Botanical Resources, Xi’an, Shaanxi, Shaanxi Province, ChinaView further author information
,
Yan ZhangXi’an Botanical Garden of Shaanxi Province, Institute of Botany of Shaanxi Province, Shaanxi Engineering Research Centre for Conservation and Utilization of Botanical Resources, Xi’an, Shaanxi, Shaanxi Province, ChinaView further author information
&
Shu-Juan LiXi’an Botanical Garden of Shaanxi Province, Institute of Botany of Shaanxi Province, Shaanxi Engineering Research Centre for Conservation and Utilization of Botanical Resources, Xi’an, Shaanxi, Shaanxi Province, ChinaCorrespondence[email protected]
View further author information
Pages 430-433 | Received 10 Feb 2022, Accepted 08 Mar 2023, Published online: 25 Mar 2023

References

  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120.
  • Chen F, Liu X, Yu C, Chen Y, Tang H, Zhang L. 2017. Water lilies as emerging models for Darwin’s abominable mystery. Hortic Res. 4:17051.
  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18.
  • Dkhar J, Kumaria S, Rao SR, Tandon P. 2012. Sequence characteristics and phylogenetic implications of the nrDNA internal transcribed spacers (ITS) in the genus Nymphaea with focus on some Indian representatives. Plant Syst Evol. 298(1):93–108.
  • Donoghue MJ. 1989. Phylogenies and the analysis of evolutionary sequences, with examples from seed plants. Evolution. 43(6):1137–1156.
  • Gruenstaeudl M, Nauheimer L, Borsch T. 2017. Plastid genome structure and phylogenomics of Nymphaeales: conserved gene order and new insights into relationships. Plant Syst Evol. 303(9):1251–1270.
  • Huang G, Deng H, Li Z, Li G. 2009. Water lily. Beijing: China Forestry Press.
  • Jacobs S. 1992. New species, lectotypes and synonyms of Australasian Nymphaea (Nymphaeaceae). Telopea. 4(4):635–641.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Kim Y, Kwon W, Song MJ, Nam S, Park J. 2019a. The complete chloroplast genome sequence of the Nymphaea lotus L. (Nymphaeaceae). Mitochondrial DNA B Resour. 4(1):389–390.
  • Kim Y, Min J, Kwon W, Song MJ, Nam S, Park J. 2019b. The complete chloroplast genome sequence of the Nymphaea capensis Thunb. (Nymphaeaceae). Mitochondrial DNA B Resour. 4(1):401–402.
  • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, Subgroup GPDP. 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 25(16):2078–2079.
  • Liu S, Ni Y, Li J, Zhang X, Yang H, Chen H, Liu C. 2023. CPGView: a package for visualizing detailed chloroplast genome structures. Mol Ecol Resour. 23(3):694–704.
  • Löhne C, Borsch T, Jacobs S, Hellquist CB, Wiersema J. 2008. Nuclear and plastid DNA sequences reveal complex reticulate patterns in Australian water-lilies (Nymphaea subgenus Anecphya, Nymphaeaceae). Austr Syst Bot. 21:229–250.
  • Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274.
  • Shi L, Chen H, Jiang M, Wang L, Wu X, Huang L, Liu C. 2019. CPGAVAS2, an integrated plastome sequence annotator and analyzer. Nucleic Acids Res. 47(W1):W65–W73.
  • Sun C, Chen F, Teng N, Xu Y, Dai Z. 2021. Comparative analysis of the complete chloroplast genome of seven Nymphaea species. Aquat Bot. 170:103353.

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