Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 8, 2023 - Issue 4
Submit an article Journal homepage
2,100
Views
0
CrossRef citations to date
0
Altmetric
Plastome Announcement

The complete chloroplast genome of Pseudostellaria davidii (franch.) Pax, 1934

Hongye Zhaoa Hebei Key Laboratory of Study and Exploitation of Chinese Medicine, Chengde Medical University, Chengde, P.R. ChinaView further author information
,
Zhaolei Zhanga Hebei Key Laboratory of Study and Exploitation of Chinese Medicine, Chengde Medical University, Chengde, P.R. China;b Key Laboratory of Chinese Medicine Resources Conservation, State Administration of Traditional Chinese Medicine of the People’s Republic of China, Engineering Research Center of Chinese Medicine Resource of Ministry of Education, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, P.R. ChinaView further author information
,
Xinyi Lia Hebei Key Laboratory of Study and Exploitation of Chinese Medicine, Chengde Medical University, Chengde, P.R. ChinaView further author information
,
Yu Tiana Hebei Key Laboratory of Study and Exploitation of Chinese Medicine, Chengde Medical University, Chengde, P.R. ChinaView further author information
,
Jingyi Zhaoa Hebei Key Laboratory of Study and Exploitation of Chinese Medicine, Chengde Medical University, Chengde, P.R. ChinaView further author information
,
Jinxin Liua Hebei Key Laboratory of Study and Exploitation of Chinese Medicine, Chengde Medical University, Chengde, P.R. China;b Key Laboratory of Chinese Medicine Resources Conservation, State Administration of Traditional Chinese Medicine of the People’s Republic of China, Engineering Research Center of Chinese Medicine Resource of Ministry of Education, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, P.R. ChinaCorrespondence[email protected]
View further author information
&
Linchun Shia Hebei Key Laboratory of Study and Exploitation of Chinese Medicine, Chengde Medical University, Chengde, P.R. China;b Key Laboratory of Chinese Medicine Resources Conservation, State Administration of Traditional Chinese Medicine of the People’s Republic of China, Engineering Research Center of Chinese Medicine Resource of Ministry of Education, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, P.R. ChinaCorrespondence[email protected]
View further author information
 show all
Pages 471-474 | Received 21 Nov 2022, Accepted 21 Mar 2023, Published online: 03 Apr 2023

References

  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120.
  • Choi K, Kim J. s, Pak JH. 2001. Natural hybridization between Pseudostellaria davidii and Pseudostellaria palibiniana (Caryophyllaceae). Plant Species Biol. 16(1):39–47.
  • Cui X, Hu Z, Ren S, Liu J. 2020. Pollen morphology of Chinese Pseudostellaria (Caryophyllaceae) and its systematic significance. Microsc Res Tech. 83(5):481–489.
  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18.
  • Edgar RC. 2022. Muscle5:High-accuracy alignment ensembles enable unbiased assessments of sequence homology and phylogeny. Nat Commun. 13(1):6968.
  • Gu X, Hao D, Xiao P. 2022. Research progress of Chinese herbal medicine compounds and their bioactivities: Fruitful 2020. Chin Herb Med. 14(02):171–186.
  • Hong S-Y, Cheon K-S, Yoo K-O, Lee H, Cho K-S, Suh J-T, Kim S-J, Nam J-H, Sohn H-B, Kim Y-H. 2017. Complete chloroplast genome sequences and comparative analysis of Chenopodium quinoa and C. album. Front Plant Sci. 8:1696.
  • Kim Y, Heo K-I, Park J. 2019a. The second complete chloroplast genome sequence of Pseudostellaria palibiniana (Takeda) Ohwi (Caryophyllaceae): intraspecies variations based on geographical distribution. Mitochondrial DNA Part B. 4(1):1310–1311.
  • Kim Y, Hong X, Jongsun P. 2019b. The complete chloroplast genome of prince ginseng, Pseudostellaria heterophylla (Miq.) Pax (Caryophyllaceae). Mitochondrial DNA B Resour. 4(2):2251–2253.
  • Liu S, Ni Y, Li J, Zhang X, Yang H, Chen H, Liu C. 2022. CPGView: a package for visualizing detailed chloroplast genome structures. Mol Ecol Res. 0:1–11.
  • Pax F, Engler H, Prantl KJDnP 1934. Pseudostellaria. Die Naturlichen Pflanzenfamilien. ed.2.16c:318.
  • Shi L, Chen H, Jiang M, Wang L, Wu X, Huang L, Liu C. 2019. CPGAVAS2, an integrated plastome sequence annotator and analyzer. Nucleic Acids Res. 47(W1):W65–W73.
  • Sloan DB, Alverson AJ, Wu M, Palmer JD, Taylor DR. 2012. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence in the angiosperm genus silene. Genome Biol Evol. 4(3):294–306.
  • Sloan DB, Triant DA, Forrester NJ, Bergner LM, Wu M, Taylor DR. 2014. A recurring syndrome of accelerated plastid genome evolution in the angiosperm tribe Sileneae (Caryophyllaceae). Mol Phylogenet Evol. 72:82–89.
  • Stadermann KB, Weisshaar B, Holtgräwe D. 2015. SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome. BMC Bioinformatics. 16(1):295.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30(9):1312–1313.
  • Yang L, Feng C, Cai M, Chen J, Ding P. 2020. Complete chloroplast genome sequence of Amomum villosum and comparative analysis with other Zingiberaceae plants. Chin Herb Med. 12(4):375–383.
  • Zeng X, Zhang M, Lei Y. 2016. Classification outline and geographical distribution of Pseudostellaria Pax in the world. J Plant Res Environ. 25(02):92–99.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.