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Plastome Announcement

The complete chloroplast genome of Striga asiatica (L.) Kuntze 1891 (Orobanchaceae), a hemiparasitic weed from Guangxi China

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Pages 497-500 | Received 05 Jan 2023, Accepted 24 Mar 2023, Published online: 10 Apr 2023

References

  • Cho W-B, Lee D-H, Choi I-S, Lee J-H. 2018. The complete chloroplast genome of hemi-parasitic Pedicularis hallaisanensis (Orobanchaceae). Mitochondrial DNA B Resour. 3(1):235–236.
  • Cochrane V, Press MC. 1997. Geographical distribution and aspects of the ecology of the hemiparasitic angiosperm Striga asiatica (L.) Kuntze: a herbarium study. J Trop Ecol. 13(3):371–380.
  • Frailey DC, Chaluvadi SR, Vaughn JN, Coatney CG, Bennetzen JL. 2018. Gene loss and genome rearrangement in the plastids of five Hemiparasites in the family Orobanchaceae. BMC Plant Biol. 18(1):1–12.
  • Greiner S, Lehwark P, Bock R. 2019. OrganellarGenomeDRAW (OGDRAW) version 1.3. 1: expanded toolkit for the graphical visualization of organellar genomes. Nucleic Acids Res. 47(W1):W59–W64.
  • Jin D-P, Kim J-S, Ku Y-B, Lim CE. 2021. The complete chloroplast genome sequence of Melampyrum koreanum (Orobanchaceae), an endemic and hemi-parasitic herb in Korea. Mitochondrial DNA B Resour. 6(11):3122–3124.
  • Jin JJ, Yu WB, Yang JB, Song Y, dePamphilis CW, Yi TS, Li DZ. 2020. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21(1):241.
  • Kakpure M, Rothe S. 2012. Qualitative phytochemical screening of Indian witchweed: Striga asiatica (L.) O. Ktze – an unexplored medicinal parasitic plant. J Exp Sci. 3(3):28–31.
  • Li X, Yang J-B, Wang H, Song Y, Corlett RT, Yao X, Li D-Z, Yu W-B. 2021. Plastid NDH pseudogenization and gene loss in a recently derived lineage from the largest hemiparasitic plant genus Pedicularis (Orobanchaceae). Plant Cell Physiol. 62(6):971–984.
  • Li X, Zhang T-C, Qiao Q, Ren Z, Zhao J, Yonezawa T, Hasegawa M, Crabbe MJC, Li J, Zhong Y. 2013. Complete chloroplast genome sequence of holoparasite Cistanche deserticola (Orobanchaceae) reveals gene loss and horizontal gene transfer from its host Haloxylon ammodendron (Chenopodiaceae). PLoS One. 8(3):e58747.
  • Liu S, Ni Y, Li J, Zhang X, Yang H, Chen H, Liu C. 2023. CPGView: a package for visualizing detailed chloroplast genome structures. Mol Ecol Resour. 23(3):694–704.
  • Nguyen LT, Schmidt HA, Von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274.
  • Rozewicki J, Li S, Amada KM, Standley DM, Katoh K. 2019. MAFFT-DASH: integrated protein sequence and structural alignment. Nucleic Acids Res. 47(W1):W5–W10.
  • Shi L, Chen H, Jiang M, Wang L, Wu X, Huang L, Liu C. 2019. CPGAVAS2, an integrated plastome sequence annotator and analyzer. Nucleic Acids Res. 47(W1):W65–W73.
  • Spallek T, Mutuku M, Shirasu K. 2013. The genus Striga: a witch profile. Mol. Plant Pathol. 14(9):861–869.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq–versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–W11.
  • Wang C, Jia G, Zhu L, Tian F. 2019. The complete chloroplast genome sequence of Lycium ruthenicum (Solanaceae), a traditional medicinal plant in China. Mitochondrial DNA B Resour. 4(2):2495–2496.
  • Wang W-J, Liu R, Wu Y, Wang H, Yu W-B. 2022. The complete chloroplast genomes of two Pedicularis species (Orobanchaceae) from Southwest China. Mitochondrial DNA B Resour. 7(6):971–973.
  • Wicke S, Müller KF, De Pamphilis CW, Quandt D, Wickett NJ, Zhang Y, Renner SS, Schneeweiss GM. 2013. Mechanisms of functional and physical genome reduction in photosynthetic and nonphotosynthetic parasitic plants of the broomrape family. Plant Cell. 25(10):3711–3725.
  • Xia Z, Wen J, Gao Z. 2019. Does the enigmatic Wightia belong to Paulowniaceae (Lamiales)? Front Plant Sci. 10:528.
  • Xu W, Chen H, Tian L, Jiang M, Yang Q, Wang L, Ahmad B, Huang L. 2020. Extensive gene loss in the plastome of holoparasitic plant Cistanche tubulosa (Orobanchaceae). Mitochondrial DNA B Resour. 5(3):2679–2681.
  • Yong-Chao L, Zhou X-R, Yang J, Fu Q-Y. 2019. Characterization of the complete chloroplast genome of Melampyrum roseum. Mitochondrial DNA B Resour. 4(2):3268–3269.
  • Yoshida S, Kim S, Wafula EK, Tanskanen J, Kim Y-M, Honaas L, Yang Z, Spallek T, Conn CE, Ichihashi Y, et al. 2019. Genome sequence of Striga asiatica provides insight into the evolution of plant parasitism. Curr Biol. 29(18):3041–3052.e4. e3044.
  • Zeng S, Zhou T, Han K, Yang Y, Zhao J, Liu Z-L. 2017. The complete chloroplast genome sequences of six Rehmannia species. Genes (Basel). 8(3):103.
  • Zhang Y, Chen S, Xu X, Wang R. 2021. The complete chloroplast genome of Foonchewia coriacea (Rubioideae: Rubiaceae): a monotypic species endemic to Guangdong, China. Mitochondrial DNA B Resour. 6(1):156–157.
  • Zheng L-P, Li L-J. 2021. Characterization of the complete chloroplast genome of Centranthera grandiflora Benth (Orobanchaceae), an important species of medicinal herb. Mitochondrial DNA B Resour. 6(6):1784–1785.