The complete mitochondrial genome of Camellia nitidissima (Theaceae)

References

• Alverson AJ, Wei XX, Rice DW, Stern DB, Barry K, Palmer JD. 2010. Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae). Mol Biol Evol. 27(6):1436–1448.
   PubMed Web of Science ®Google Scholar
• Asaf S, Khan AL, Al-Harrasi A, Kim TH, Lee IJ. 2018. The first complete mitochondrial genome of wild soybean (Glycine soja). Mitochondrial DNA B Resour. 3(2):527–528.
   PubMed Web of Science ®Google Scholar
• Bi CW, Lu NL, Xu YQ, He CP, Lu ZH. 2020. Characterization and analysis of the mitochondrial genome of common bean (Phaseolus vulgaris) by comparative genomic approaches. IJMS. 21(11):3778.
   Google Scholar
• Bi CW, Paterson AH, Wang XL, Xu YQ, Wu DY, Qu YS, Jiang A, Ye QL, Ye N. 2016. Analysis of the complete mitochondrial genome sequence of the diploid cotton Gossypium raimondii by comparative genomics approaches. Biomed Res Int. 2016:5040598.
   PubMed Web of Science ®Google Scholar
• Bi CW, Wang XL, Xu YQ, Wei SY, Shi Y, Dai XG, Yin TM, Ye N. 2016. The complete mitochondrial genome of Medicago truncatula. Mitochondrial DNA B Resour. 1(1):122–123.
   PubMed Web of Science ®Google Scholar
• Bock DG, Kane NC, Ebert DP, Rieseberg LH. 2014. Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: neither from Jerusalem nor an artichoke. New Phytol. 201(3):1021–1030.
   PubMed Web of Science ®Google Scholar
• Chang SX, Wang YK, Lu JJ, Gai JY, Li JJ, Chu P, Guan RZ, Zhao TJ. 2013. The mitochondrial genome of soybean reveals complex genome structures and gene evolution at intercellular and phylogenetic levels. PLoS One. 8(2):e56502.
   PubMed Web of Science ®Google Scholar
• Chang SX, Yang TT, Du TQ, Huang YJ, Chen JM, Yan JY, He JB, Guan RZ. 2011. Mitochondrial genome sequencing helps show the evolutionary mechanism of mitochondrial genome formation in Brassica. BMC Genomics. 12:497.
   PubMed Web of Science ®Google Scholar
• Giegé P, Brennicke A. 1999. RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs. Proc Natl Acad Sci USA. 96(26):15324–15329.
   PubMed Web of Science ®Google Scholar
• Goremykin VV, Lockhart PJ, Viola R, Velasco R. 2012. The mitochondrial genome of Malus domestica and the import-driven hypothesis of mitochondrial genome expansion in seed plants. Plant J. 71(4):615–626.
   PubMed Web of Science ®Google Scholar
• Goremykin VV, Salamini F, Velasco R, Viola R. 2009. Mitochondrial DNA of Vitis vinifera and the issue of rampant horizontal gene transfer. Mol Biol Evol. 26(1):99–110.
   PubMed Web of Science ®Google Scholar
• Guo WH, Grewe F, Fan WS, Young GJ, Knoop V, Palmer JD, Mower JP. 2016. Ginkgo and Welwitschia mitogenomes reveal extreme contrasts in gymnosperm mitochondrial evolution. Mol Biol Evol. 33(6):1448–1460.
   PubMed Web of Science ®Google Scholar
• Handa H. 2003. The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana. Nucleic Acids Res. 31(20):5907–5916.
   PubMed Web of Science ®Google Scholar
• He D, Li X, Sai X, Wang L, Li S, Xu Y. 2018. Camellia nitidissima C.W. Chi: a review of botany, chemistry, and pharmacology. Phytochem Rev. 17(2):327–349.
   Web of Science ®Google Scholar
• Hou X, Du H, Yang R, Qi J, Huang Y, Feng S, Wu Y, Lin S, Liu Z, Jia AQ, et al. 2018. The antitumor activity screening of chemical constituents from Camellia nitidissima Chi. Int J Mol Med. 41(5):2793–2801.
   PubMed Web of Science ®Google Scholar
• Jeong YM, Chung WH, Choi AY, Mun JH, Kim N, Yu HJ. 2016. The complete mitochondrial genome of cultivated radish WK10039 (Raphanus sativus L.). Mitochondrial DNA A DNA Mapp Seq Anal. 27(2):941–942.
   PubMedGoogle Scholar
• Jiang L, Fan Z, Tong R, Zhou X, Li J, Yin H. 2020. Functional diversification of the dihydroflavonol 4-reductase from Camellia nitidissima Chi. in the control of polyphenol biosynthesis. Genes. 11(11):1341.
   PubMed Web of Science ®Google Scholar
• Jin JJ, Yu WB, Yang JB, Song Y, dePamphilis CW, Yi TS, Li DZ. 2020. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21(1):241.
   PubMed Web of Science ®Google Scholar
• Kazakoff SH, Imelfort M, Edwards D, Koehorst J, Biswas B, Batley J, Scott PT, Gresshoff PM. 2012. Capturing the biofuel wellhead and powerhouse: the chloroplast and mitochondrial genomes of the leguminous feedstock tree Pongamia pinnata. PLoS One. 7(12):e51687.
   PubMed Web of Science ®Google Scholar
• Koren S, Walenz BP, Berlin K, Miller JR, Bergman NH, Phillippy AM. 2017. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. Genome Res. 27(5):722–736.
   PubMed Web of Science ®Google Scholar
• Li X, Wang J, Sun Z, Wang J, Yin H, Fan Z, Li J. 2019. Flavonoid components and their effects on flower colors in Camellia nitidissima, White C. japonica and their three hybrid cultivars. Acta Horticulturae Sinica. 46(06):1145–1154.
   Google Scholar
• Lin JN, Lin HY, Yang NS, Li YH, Lee MR, Chuang CH, Ho CT, Kuo SC, Way TD. 2013. Chemical constituents and anticancer activity of yellow camellias against MDA-MB-231 human breast cancer cells. J Agric Food Chem. 61(40):9638–9644.
   PubMed Web of Science ®Google Scholar
• Park S, Ruhlman TA, Sabir JS, Mutwakil MH, Baeshen MN, Sabir MJ, Baeshen NA, Jansen RK. 2014. Complete sequences of organelle genomes from the medicinal plant Rhazya stricta (Apocynaceae) and contrasting patterns of mitochondrial genome evolution across asterids. BMC Genomics. 15(1):405.
   PubMedGoogle Scholar
• Rawal HC, Kumar PM, Bera B, Singh NK, Mondal TK. 2020. Decoding and analysis of organelle genomes of Indian tea (Camellia assamica) for phylogenetic confirmation. Genomics. 112(1):659–668.
   PubMed Web of Science ®Google Scholar
• Straub SC, Cronn RC, Edwards C, Fishbein M, Liston A. 2013. Horizontal transfer of DNA from the mitochondrial to the plastid genome and its subsequent evolution in milkweeds (apocynaceae). Genome Biol Evol. 5(10):1872–1885.
   PubMed Web of Science ®Google Scholar
• Tang MY, Chen ZW, Grover CE, Wang YM, Li SS, Liu GZ, Ma ZY, Wendel JF, Hua JP. 2015. Rapid evolutionary divergence of Gossypium barbadense and G. hirsutum mitochondrial genomes. BMC Genomics. 16:770.
   PubMed Web of Science ®Google Scholar
• Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq-versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–W11.
   PubMed Web of Science ®Google Scholar
• Wang W, Liu H, Wang Z, Qi J, Yuan S, Zhang W, Chen H, Finley JW, Gu L, Jia AQ. 2016. Phytochemicals from Camellia nitidissima Chi inhibited the formation of advanced glycation end-products by scavenging methylglyoxal. Food Chem. 205:204–211.
   PubMed Web of Science ®Google Scholar
• Xu YQ, Zhang FQ, Hu K. 2017. The complete mitochondrial genome sequence of an annual wild tobacco Nicotiana attenuata. Mitochondrial DNA B Resour. 2(2):924–925.
   PubMed Web of Science ®Google Scholar
• Zhang D, Gao F, Jakovlić I, Zou H, Zhang J, Li WX, Wang GT. 2020. PhyloSuite: an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. Mol Ecol Resour. 20(1):348–355.
   PubMed Web of Science ®Google Scholar
• Zhou X, Li J, Zhu Y, Ni S, Chen J, Feng X, Zhang Y, Li S, Zhu H, Wen Y. 2017. De novo assembly of the Camellia nitidissima transcriptome reveals key genes of flower pigment biosynthesis. Front Plant Sci. 8:1545.
   PubMed Web of Science ®Google Scholar