406
Views
0
CrossRef citations to date
0
Altmetric
Plastome Reports

Characterization of the complete chloroplast genome sequence of Limnophila sessiliflora Blume 1826 (Plantaginaceae)

, , &
Pages 585-588 | Received 19 Jan 2023, Accepted 26 Apr 2023, Published online: 18 May 2023

References

  • Albach DC, Meudt DT, Oxelman B. 2005. Piecing together the "new" Plantaginaceae. Am J Bot. 92(2):297–315.
  • Alexandros S. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30:1312–1313.
  • Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
  • Fowler RM, Murphy DJ, McLay T, Buirchell BJ, Chinnock RJ, Bayly MJ. 2021. Molecular phylogeny of tribe Myoporeae (Scrophulariaceae) using nuclear ribosomal DNA: generic relationships and evidence for major clades. Taxon. 70(3):570–588.
  • Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser. 41:95–98.
  • Hong DY, Yang H, Jin CL, Holmgren NH. 1998. Scrophulariaceae. In: Wu ZY, Raven PH, editors. Flora of China. Beijing: Science Press; p. 18.
  • Jin JJ, Yu WB, Yang JB, Song Y, Pamphilis C, Yi TS, Li DZ. 2020. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21(1):241.
  • Kazutaka K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Li LX, Lin Y, Tang DF, Quan CQ, Liang Y, Qin SS, Wei F, Wei KH. 2022. The complete chloroplast genome of Scoparia dulcis (Plantaginaceae). Mitochondrial DNA B Resour. 7(1):118–119.
  • Liu B, Tan YH, Liu S, Olmstead RG, Min DZ, Chen ZD, Joshee N, Vaidya BN, Chung R, Li B. 2020. Phylogenetic relationships of Cyrtandromoea and Wightia revisited: a new tribe in Phrymaceae and a new family in Lamiales. J Syst Evol. 58(1):1–17.
  • Liu S, Ni Y, Li J, Zhang X, Yang H, Chen H, Liu C. 2023. CPGView: a package for visualizing detailed chloroplast genome structures. Mol Ecol Resour. 23(3):694–704.
  • Matthew K, Richard M, Amy W, Steven SH, Matthew C, Shane S, Simon B, Alex C, Sidney M, Chris D. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28:1647–1649.
  • Nguyen LT, Schmidt HA, Arndt VH, Bui Quang M. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274.
  • Olmstead R, Pamphilis C, Wolfe A, Young N, Elisons W, Reeves P. 2001. Disintegration of the Scrophulariaceae. Am J Bot. 88(2):348–361.
  • Oxelman B, Kornhall P, Olmstead RG, Bremer B. 2005. Further disintegration of Scrophulariaceae. Taxon. 54(2):411–425.
  • Qu XJ, Moore MJ, Li DZ, Yi TS. 2019. PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes. Plant Methods. 15(1):1–12.
  • Rahmanzadeh R, Müller K, Fischer E, Bartels D, Borsch T. 2005. The Linderniaceae and Gratiolaceae are further lineages distinct from the Scrophulariaceae (Lamiales). Plant Biol. 7(1):67–78.
  • Su CK, Gi CM, Seonjoo P. 2016. The complete chloroplast genome sequences of three Veroniceae species (Plantaginaceae): comparative analysis and highly divergent regions. Front Plant Sci. 7:355.
  • Vito SA, Castro SV, Mercedes S, Dalla CG, Moura MR, Olmos SA. 2022. Phylogenetics of Gratioleae (Plantaginaceae): paraphyly of Stemodia and its implications for generic circumscriptions, with insights from floral evolution. Bot J Linn Soc. 200:194–217.
  • Yu JJ, Dong HJ. 2021. The complete chloroplast genome sequence of Callitriche palustris (Plantaginaceae). Mitochondrial DNA B Resour. 6(9):2777–2778.