850
Views
0
CrossRef citations to date
0
Altmetric
Plastome Report

Characterization of the complete mitochondrial genome of the critically endangered Southern River Terrapin, Batagur affinis affinis (Reptilia: Geoemydidae)

, &
Pages 719-722 | Received 27 Mar 2023, Accepted 04 Jun 2023, Published online: 04 Jul 2023

References

  • Anderson S, Bankier AT, Barrell BG, de Bruijn MH, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, et al. 1981. Sequence and organization of the human mitochondrial genome. Nature. 290(5806):457–465. doi: 10.1038/290457a0.
  • Cantor T. 1847. Catalog of reptiles inhabiting the Malayan peninsula and islands. Journal of the Asiatic Society of Bengal. 16:607–656, 897–952, 1026–1078.
  • Cui L, Rao D, Zhang M. 2020. The complete mitochondrial genome of Amyda cartilaginea (Testudines: Trionychidae). Mitochondrial DNA Part B. 5(3):3652–3654. doi: 10.1080/23802359.2020.1832595.
  • Das SP, Krishnan R, Majhi A, Sunil M, Tejwan Y, Srivastava A, Gadnayak A. 2021. Batagur kachuga isolate BK1 mitochondrion, complete genome. [accessed from] https://www.ncbi.nlm.nih.gov/nucleotide/MZ562559.1?report=genbank&log$=nucltop&blast_rank=2&RID=RT0UBXHV01N.
  • Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39(4):783–791. doi: 10.1111/j.1558-5646.1985.tb00420.x.
  • Feng L, Yang J, Zhang YP, Zhao GF. 2017. The complete mitochondrial genome of the Burmese roofed turtle (Batagur trivittata) (Testudines: Geoemydidae). Conservation Genet Resour. 9(1):95–97. doi: 10.1007/s12686-016-0629-5.
  • Horne BD, Chan EH, Platt SG, Moll EO. 2016. Batagur affinis. The IUCN Red List of Threatened Species [accessed 2017 Aug 13]. doi: 10.2305/IUCN.UK.2016-.1.RLTS.T170501A1315041.en.
  • Kimura M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol. 16(2):111–120. doi: 10.1007/BF01731581.
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35(6):1547–1549. doi: 10.1093/molbev/msy096.
  • Kundu S, Kumar V, Tyagi K, Chandra K. 2020. The complete mitochondrial genome of the endangered Assam Roofed Turtle, Pangshura sylhetensis (Testudines: Geoemydidae): Genomic features and phylogeny. PLoS One. 15(4):e0225233. doi: 10.1371/journal.pone.0225233.
  • Kundu S, Kumar V, Tyagi K, Chakraborty R, Chandra K. 2019. The first complete mitochondrial genome of the Indian Tent Turtle, Pangshura tentoria (Testudines: Geoemydidae): characterization and comparative analysis. Ecol Evol. 9(18):10854–10868. doi: 10.1002/ece3.5606.
  • Li J, Lu Y, Zan J, Nie L. 2017. Complete mitochondrial genome of the Cyclemys pulchristriata (Chelonia: Geoemydidae). Mitochondrial DNA B Resour. 2(2):403–404. doi: 10.1080/23802359.2017.1347836.
  • Mohd-Salleh MH, Esa Y, Salleh SM, Mohd Sah SA. 2022. Turtles in Malaysia: a Review of Conservation Status and a Call for Research. Animals. 12(17):2184. doi: 10.3390/ani12172184.
  • Praschag P, Hundsdörfer AK, Fritz U. 2007. Phylogeny and taxonomy of endangered South and Southeast Asian freshwater turtles elucidated by mtDNA sequence variation (Testudines: geoemydidae: batagur, Callagur, Hardella, Kachuga, Pangshura). Zool Scripta. 36(5):429–442. doi: 10.1111/j.1463-6409.2007.00293.x.
  • Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 4:406–425.
  • Salleh MHM, Esa Y, Mohamed R, Pelf-Nyok C, Ismail HM. 2022. Saving Freshwater Turtle – Batagur affinis. In: Shanbhag S., editors. Emerging trends in science, social science, engineering and management-a multidisciplinary approach. India: Research Circle & International Institute of Knowledge and Research; p. 296–307.
  • Salleh MHM, Esa Y, Pau S-SN. 2023. Conservation genetics of the critically endangered Southern River Terrapin (Batagur affinis) in Malaysia: genetic diversity and novel subspecies distribution ranges. Biology. 12(4):520. doi: 10.3390/biology12040520.
  • Salleh MHM, Esa Y. 2022. Minimally invasive blood collection techniques as a source of gDNA for genetic studies on turtles and tortoises. Int J Aquatic Biol. 10(2):145–150.
  • Tang XS, Yang DC, Peng LF, Weng SY, Huang S. 2019. The complete mitochondrial genome of the critically endangered Cuora mccordi (Reptilia: geoemydidae). Mitochondrial DNA Part B. 4(1):480–481. doi: 10.1080/23802359.2018.1536493.
  • Turtle Conservation Coalition [Rhodin AGJ, Walde AD, Horne BD, Van Dijk PP, Blanck T, Hudson R.(eds)]. 2011. Turtles in trouble: the World’s 25+ most endangered Tortoises and Freshwater Turtles—2011. Lunenburg, MA: IUCN/SSC Tortoise and Freshwater Turtle Specialist Group, Turtle Conservation Fund, Turtle Survival Alliance, Turtle Conservancy, Chelonian Research Foundation, Conservation International, Wildlife Conservation Society, and San Diego Zoo Global, p. 54. pp. (2) (PDF) Turtles in Trouble: the World’s 25+ Most Endangered Tortoises and Freshwater Turtles—2011.
  • Uwe F, Havas P. 2007. Checklist of chelonians of the World. VZ. 57(2):149–368. doi: 10.3897/vz.57.e30895.