481
Views
0
CrossRef citations to date
0
Altmetric
Mitogenome Reports

Complete mitochondrial genome of Hydrolagus mitsukurii (Jordan & Snyder, 1904)

, &
Pages 682-685 | Received 16 Nov 2022, Accepted 02 Jun 2023, Published online: 18 Jun 2023

References

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19(5):455–477. doi: 10.1089/cmb.2012.0021.
  • Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319. doi: 10.1016/j.ympev.2012.08.023.
  • Coil D, Jospin G, Darling AE. 2015. A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data. Bioinformatics. 31(4):587–589. doi: 10.1093/bioinformatics/btu661.
  • Finucci B, Tanaka S, Semba Y, Kyne PM. 2020. Hydrolagus mitsukurii. The IUCN Red List of Threatened Species. 2020 e.T60194A124450319; [accessed 2023 February 28]. doi: 10.2305/IUCN.UK.2020-2.RLTS.T60194A124450319.en.
  • Gomes-dos-Santos A, Arrondo NV, Machado AM, Veríssimo A, Pérez M, Román E, Castro LFC, Froufe E. 2020. The complete mitochondrial genome of the deep-water cartilaginous fish Hydrolagus affinis (de Brito Capello, 1868) (Holocephali: chimaeridae). Mitochondrial DNA. Part B. Resources. 5(2):1810–1812. doi: 10.1080/23802359.2020.1749154.
  • Gomes-dos-Santos A, Vilas-Arrondo N, Machado AM, Veríssimo A, Pérez M, Baldó F, Castro LFC, Froufe E. 2021. Shedding light on the Chimaeridae taxonomy: the complete mitochondrial genome of the cartilaginous fish Hydrolagus mirabilis (Collett, 1904) (Holocephali: chimaeridae). Mitochondrial DNA B Resour. 6(2):420–422. doi: 10.1080/23802359.2020.1870887.
  • Inoue JG, Miya M, Lam K, Tay BH, Danks JA, Bell J, Walker TI, Venkatesh B. 2010. Evolutionary origin and phylogeny of the modern Holocephalans (Chondrichthyes: chimaeriformes): a mitogenomic perspective. Mol Biol Evol. 27(11):2576–2586. doi: 10.1093/molbev/msq147.
  • Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 14(6):587–589. doi: 10.1038/nmeth.4285.
  • Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL. 2004. Versatile and open software for comparing large genomes. Genome Biol. 5(2):R12. doi: 10.1186/gb-2004-5-2-r12.
  • Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, von Haeseler A, Lanfear R. 2020. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Mol Biol Evol. 37(5):1530–1534. doi: 10.1093/molbev/msaa015.
  • Venkatesh B, Kirkness EF, Loh Y, Halpern AL, Lee AP, Johnson J, Dandona N, Viswanathan LD, Tay A, Venter JC, et al. 2007. Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome. PLoS Biol. 5(4):e101. doi: 10.1371/journal.pbio.0050101.
  • Vilas-Arrondo N, Gomes-dos-Santos A, Pérez M, Baldó F, Veríssimo A, Catarino D, Machado AM, Román-Marcote E, Bañón R, Froufe E, et al. 2022. A mitochondrial genome assembly of the opal chimaera, Chimaera opalescens Luchetti, Iglésias et Sellos 2011, using PacBio HiFi long reads. Mitochondrial DNA B Resour. 7(3):434–437. doi: 10.1080/23802359.2022.2044403.
  • Walker BJ, Abeel T, Shea T, Priest M, Abouelliel A, Sakthikumar S, Cuomo CA, Zeng Q, Wortman J, Young SK, et al. 2014. Pilon: An integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLoS One. 9(11):e112963. doi: 10.1371/journal.pone.0112963.