The mitochondrial genome of the pentastome parasite Raillietiella orientalis Hett, 1915 (Raillietiellida; Raillietiellidae) with notes on its phylogenetic position

References

• Allio R, Schomaker-Bastos A, Romiguier J, Prosdocimi F, Nabholz B, Delsuc F. 2020. MitoFinder: efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics. Mol Ecol Resour. 20(4):892–905. doi: 10.1111/1755-0998.13160.
   PubMed Web of Science ®Google Scholar
• Bogan J, Steen D, O’Hanlon B, Garner M, Walden H, Wellehan J. 2022. Drymarchon couperi (eastern indigo snake). Death associated with Raillietiella orientalis. Herpetol Rev. 53(1):147.
   Google Scholar
• Boore JL, Brown WM. 1998. Big trees from little genomes: mitochondrial gene order as a phylogenetic tool. Curr Opin Genet Dev. 8(6):668–674. doi: 10.1016/s0959-437x(98)80035-x.
   PubMed Web of Science ®Google Scholar
• Boore JL. 1999. Animal mitochondrial genomes. Nucleic Acids Res. 27(8):1767–1780. doi: 10.1093/nar/27.8.1767.
   PubMed Web of Science ®Google Scholar
• Castellucci F, Luchetti A, Mantovani B. 2022. Exploring mitogenome evolution in Branchiopoda (Crustacea) lineages reveals gene order rearrangements in Cladocera. Sci Rep. 12(1):4931. doi: 10.1038/s41598-022-08873-y.
   PubMed Web of Science ®Google Scholar
• Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 17(4):540–552. doi: 10.1093/oxfordjournals.molbev.a026334.
   PubMed Web of Science ®Google Scholar
• Chen S, Zhou Y, Chen Y, Gu J. 2018. fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics. 34(17):i884–i890. doi: 10.1093/bioinformatics/bty560.
   PubMed Web of Science ®Google Scholar
• Cucini C, Leo C, Iannotti N, Boschi S, Brunetti C, Pons J, Fanciulli PP, Frati F, Carapelli A, Nardi F. 2021. EZmito: a simple and fast tool for multiple mitogenome analyses. Mitochondrial DNA B Resour. 6(3):1101–1109. doi: 10.1080/23802359.2021.1899865.
   PubMed Web of Science ®Google Scholar
• Dajem SB, Morsy K, Alshehri M, El-Kott A, Ibrahim E, El-Mekkawy H, Abdel-Gaber R. 2021. Morphology and molecular taxonomy of the tongue worm, genus Raillietiella (Pentastomida) from the lungs of berber skinks Eumeces schneideri (Scincidae): First report. Rev Argent Microbiol. 53(2):110–123. doi: 10.1016/j.ram.2020.06.010.
   PubMed Web of Science ®Google Scholar
• Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18. doi: 10.1093/nar/gkw955.
   Google Scholar
• Donath A, Jühling F, Al-Arab M, Bernhart SH, Reinhardt F, Stadler PF, Middendorf M, Bernt M. 2019. Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes. Nucleic Acids Res. 47(20):10543–10552. doi: 10.1093/nar/gkz833.
   PubMed Web of Science ®Google Scholar
• Farrell T, Agugliaro j, Walden H, Wellehan J, Childress A, Lind C. 2019. Spillover of pentastome parasites from invasive Burmese pythons (Python bivittatus) to pygmy rattlesnakes (Sistrurus miliarius), extending parasite range in Florida, USA. Herpetol Rev. 50(1):73–76.
   Google Scholar
• Fieldsend T, Harman M, Miller M. 2021. First record of an Asian tongueworm, Raillietiella orientalis (Pentastomida: raillietiellidae), parasitizing a Tokay Gecko, (Gekko gecko, Squamata: gekkonidae): a novel interaction between two non-native species in Florida. RandA. 28(2):255–256. doi: 10.17161/randa.v28i2.15238.
   Google Scholar
• Greiner S, Lehwark P, Bock R. 2019. OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes. Nucleic Acids Res. 47(W1):W59–W64. doi: 10.1093/nar/gkz238.
   PubMed Web of Science ®Google Scholar
• Hett ML. 1915. On some new Pentastomids from the Zoological Society’s Gardens, London. Proc Zool Soc Lond. 85(1):115–121. doi: 10.1111/j.1469-7998.1915.00115.x.
   Google Scholar
• Kelehear C, Spratt DM, O'Meally D, Shine R. 2014. Pentastomids of wild snakes in the Australian tropics. Int J Parasitol Parasites Wildl. 3(1):20–31. doi: 10.1016/j.ijppaw.2013.12.003.
   PubMedGoogle Scholar
• Lavrov DV, Brown WM, Boore JL. 2004. Phylogenetic position of the Pentastomida and (pan)crustacean relationships. Proc Biol Sci. 271(1538):537–544. doi: 10.1098/rspb.2003.2631.
   PubMed Web of Science ®Google Scholar
• Meng G, Li Y, Yang C, Liu S. 2019. MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization. Nucleic Acids Res. 47(11):e63-e63. doi: 10.1093/nar/gkz173.
   Web of Science ®Google Scholar
• Miller MA, Kinsella JM, Snow RW, Hayes MM, Falk BG, Reed RN, Mazzotti FJ, Guyer C, Romagosa CM. 2018. Parasite spillover: indirect effects of invasive Burmese pythons. Ecol Evol. 8(2):830–840. doi: 10.1002/ece3.3557.
   PubMed Web of Science ®Google Scholar
• Naude T, Pant S, Tavassoli M, Sarker S, Ghorashi SA. 2018. The complete mitochondrial genome of Linguatula serrata (tongue worm) isolated from a dog and phylogenetic analysis. Mitochondrial DNA B Resour. 3(1):357–358. doi: 10.1080/23802359.2018.1450679.
   PubMed Web of Science ®Google Scholar
• Palmisano JN, Bockoven C, McPherson SM, Ossiboff RJ, Walden HDS, Farrell TM. 2022. Infection experiments indicate that common Florida anurans and lizards may serve as intermediate hosts for the invasive pentastome parasite, Raillietiella orientalis. J Herpetol. 56(3):355–361.
   Web of Science ®Google Scholar
• Pare JA. 2008. An overview of pentastomiasis in reptiles and other vertebrates. J Exot Pet Med. 17(4):285–294. doi: 10.1053/j.jepm.2008.07.005.
   Web of Science ®Google Scholar
• Salinas-Giegé T, Giegé R, Giegé P. 2015. tRNA biology in mitochondria. Int J Mol Sci. 16(3):4518–4559. doi: 10.3390/ijms16034518.
   PubMed Web of Science ®Google Scholar
• Tan MH, Gan HM, Lee YP, Bracken-Grissom H, Chan T-Y, Miller AD, Austin CM. 2019. Comparative mitogenomics of the Decapoda reveals evolutionary heterogeneity in architecture and composition. Sci Rep. 9(1):10756. doi: 10.1038/s41598-019-47145-0.
   PubMedGoogle Scholar
• Trifinopoulos J, Nguyen L-T, von Haeseler A, Minh BQ. 2016. W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Res. 44(W1):W232–W235. doi: 10.1093/nar/gkw256.
   PubMed Web of Science ®Google Scholar
• Walden HDS, Iredale ME, Childress A, Wellehan JFX, Ossiboff RJ. 2020. Case Report: invasive pentastomes, Raillietiella orientalis (Sambon, 1922), in a free-ranging banded water snake (Nerodia fasciata) in North Central Florida, USA. Front Vet Sci. 7:467. doi: 10.3389/fvets.2020.00467.
   PubMed Web of Science ®Google Scholar
• Wernersson R, Pedersen AG. 2003. RevTrans: multiple alignment of coding DNA from aligned amino acid sequences. Nucleic Acids Res. 31(13):3537–3539. doi: 10.1093/nar/gkg609.
   PubMed Web of Science ®Google Scholar