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Mitochondrial DNA Part B
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Volume 8, 2023 - Issue 7
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Mitogenome Announcement

The complete chloroplast genome sequence of Begonia ferox, an endangered species in China

Yangming Zhoua College of Tourism and Landscape Architecture, Guilin University of Technology, Guilin, ChinaView further author information
,
Xuan Yanga College of Tourism and Landscape Architecture, Guilin University of Technology, Guilin, ChinaView further author information
,
Qiongyue Liangb Guangxi Institute of Botany, Guangxi Zhuang Autonomous Region and Chinese Academy of Sciences, Guilin, ChinaView further author information
,
Tao Dengb Guangxi Institute of Botany, Guangxi Zhuang Autonomous Region and Chinese Academy of Sciences, Guilin, ChinaCorrespondence[email protected]
View further author information
&
Xinghua Hub Guangxi Institute of Botany, Guangxi Zhuang Autonomous Region and Chinese Academy of Sciences, Guilin, ChinaView further author information
Pages 746-750 | Received 01 Nov 2022, Accepted 23 Jun 2023, Published online: 18 Jul 2023

References

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19(5):455–477. doi: 10.1089/cmb.2012.0021.
  • Doyle JJ. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
  • Greiner S, Lehwark P, Bock R. 2019. OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes. Nucleic Acids Res. 47(W1):W59–W64. doi: 10.1093/nar/gkz238.
  • Harrison N, Harrison RJ, Kidner CA. 2016. Comparative analysis of Begonia plastid genomes and their utility for species-level phylogenetics. PLOS One. 11(4):e0153248. doi: 10.1371/journal.pone.0153248.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780. doi: 10.1093/molbev/mst010.
  • Letunic I, Bork P. 2007. Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics. 23(1):127–128. doi: 10.1093/bioinformatics/btl529.
  • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup. 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 25(16):2078–2079. doi: 10.1093/bioinformatics/btp352.
  • Ning C, Liao B-S, Cong-Lian L, Shi-Feng LI, Hao Z, Jiang XU, Li X-W, Shi-Lin C. 2020. Complete chloroplast genome of Salvia plebeia: organization, specific barcode and phylogenetic analysis. Chin J Nat Med. 18(8):563–572.
  • Peng CI, Yang HA, Kono Y, Chung KF, Huang YS, Wu WH, Liu Y. 2013. Novelties in Begonia sect. Coelocentrum: B. longgangensis and B. ferox from limestone areas in Guangxi, China. Bot Stud. 54(1):44. doi: 10.1186/1999-3110-54-44.
  • Qu XJ, Moore MJ, Li DZ, Yi TS. 2019. PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes. Plant Methods. 15(1):1–12. doi: 10.1186/s13007-019-0435-7.
  • Tian D, Xiao Y, Tong Y, Fu N, Liu Q, Li C. 2018. Diversity and conservation of Chinese wild begonias. Plant Divers. 40(3):75–90. doi: 10.1016/j.pld.2018.06.002.
  • Trifinopoulos J, Nguyen LT, von Haeseler A, Minh BQ. 2016. W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Res. 44(W1):W232–W235. doi: 10.1093/nar/gkw256.

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