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Mitogenome Announcement

The complete mitochondrial genome of Rana coreana (Anura: Ranidae)

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Pages 742-745 | Received 19 Jan 2023, Accepted 27 Jun 2023, Published online: 06 Jul 2023

References

  • Bernt M, Donath A, Juhling F, Externbrink F, Florentz C, Fritzsch G, Putz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319. doi:10.1016/j.ympev.2012.08.023.
  • Chen JJ. 2018. The complete mitochondrial genome of common terrestrial frog (Rana temporaria). Mitochondrial DNA B Resour. 3(2):978–979. doi:10.1080/23802359.2018.1507649.
  • Chen W, Qian W, Miao K, Qian R, Yuan S, Liu W, Dai J, Hu C, Chang Q. 2022. Comparative mitogenomics of true frogs (Ranidae, Anura), and its implications for the phylogeny and evolutionary history of Rana. Animals. 12(10):1250. doi:10.3390/ani12101250.
  • Dong B, Zhou Y, Yang B. 2016. The complete mitochondrial genome of the Rana huanrensis (Anura: Ranidae). Mitochondrial DNA A DNA Mapp Seq Anal. 27(6):4551–4552. doi:10.3109/19401736.2015.1101558.
  • Formenti G, Rhie A, Balacco J, Haase B, Mountcastle J, Fedrigo O, Brown S, Capodiferro MR, Al-Ajli FO, Ambrosini R, et al. 2021. Complete vertebrate mitogenomes reveal widespread repeats and gene duplications. Genome Biol. 22(1):120. doi:10.1186/s13059-021-02336-9.
  • Grant JR, Stothard P. 2008. The CGView Server: a comparative genomics tool for circular genomes. Nucleic Acids Res. 36(Web Server issue):W181–W184. doi:10.1093/nar/gkn179.
  • Hahn C, Bachmann L, Chevreux B. 2013. Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads – a baiting and iterative mapping approach. Nucleic Acids Res. 41(13):e129. doi:10.1093/nar/gkt371.
  • Huang X, Madan A. 1999. CAP3: a DNA sequence assembly program. Genome Res. 9(9):868–877. doi:10.1101/gr.9.9.868.
  • Jiang L, Zhang M, Deng L, Xu Z, Shi H, Jia X, Lai Z, Ruan Q, Chen W. 2020. Characteristics of the mitochondrial genome of Rana omeimontis and related species in Ranidae: gene rearrangements and phylogenetic relationships. Ecol Evol. 10(23):12817–12837. doi:10.1002/ece3.6824.
  • Kim JB, Min MS, Yang SY, Matsui M. 2002. Genetic relationships among Korean brown frog species (Anura, Ranidae), with special reference to evolutionary divergences between two allied species Rana dybowskii and R. huanrenensis. Zoolog Sci. 19(3):369–382. doi:10.2108/zsj.19.369.
  • Li J, Lei G, Fu C. 2016. Complete mitochondrial genomes of two brown frogs, Rana dybowskii and Rana cf. chensinensis (Anura: Ranidae). Mitochondrial DNA A DNA Mapp Seq Anal. 27(1):155–156. doi:10.3109/19401736.2013.878921.
  • Li J, Yin W, Xia R, Lei G, Fu C. 2016. Complete mitochondrial genome of a brown frog, Rana kunyuensis (Anura: Ranidae). Mitochondrial DNA A DNA Mapp Seq Anal. 27(1):34–35. doi:10.3109/19401736.2013.869681.
  • Liu P, Wang H, Zhao W. 2017. Sequencing and analysis of the complete mitochondrial genome of Rana amurensis (Anura: Ranidae). Mitochondrial DNA B Resour. 2(2):424–425. doi:10.1080/23802359.2017.1357444.
  • Meng G, Li Y, Yang C, Liu S. 2019. MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization. Nucleic Acids Res. 47(11):e63. doi:10.1093/nar/gkz173.
  • Ni N, Yu D, Storey KB, Zheng R, Zhang J. 2016. The complete mitochondrial genome of Lithobates sylvaticus (Anura: Ranidae). Mitochondrial DNA A DNA Mapp Seq Anal. 27(4):2460–2461. doi:10.3109/19401736.2015.1033697.
  • Peso-Fernãndez M, Ponti De La Iglesia R, Ponz Segrelles G, Gonzãlez Martïnez R, Arcones Segovia A, Vieites DR. 2016. The complete mitochondrial genome of the endangered European brown frog Rana pyrenaica through RNAseq. Mitochondrial DNA B Resour. 1(1):394–396. doi:10.1080/23802359.2016.1174087.
  • Song JY, Matsui M, Chung KH, Oh HS, Zhao W. 2006. Distinct specific status of the Korean brown frog, Rana amurensis coreana (Amphibia: Ranidae). Zoolog Sci. 23(2):219–224. doi:10.2108/zsj.23.219.
  • Suk HY, Jeon JY, Kim D-Y, Cha S, Min M-S. 2021. The complete mitochondrial genome information of Rana uenoi (Amphibia, Anura, Ranidae) and the phylogenetic implication. Mitochondrial DNA B Resour. 6(2):689–690. doi:10.1080/23802359.2021.1882896.
  • Tamura K, Stecher G, Kumar S. 2021. MEGA11: molecular evolutionary genetics analysis version 11. Mol Biol Evol. 38(7):3022–3027. doi:10.1093/molbev/msab120.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq – versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–W11. doi:10.1093/nar/gkx391.
  • Walker BJ, Abeel T, Shea T, Priest M, Abouelliel A, Sakthikumar S, Cuomo CA, Zeng Q, Wortman J, Young SK, et al. 2014. Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLOS One. 9(11):e112963. doi:10.1371/journal.pone.0112963.
  • Wang J, Li Z, Gao H, Liu Z, Teng L. 2020. The complete mitochondrial genome of the Rana kukunoris (Anura: Ranidae) from Inner Mongolia, China. Mitochondrial DNA B Resour. 5(1):586–587. doi:10.1080/23802359.2019.1710591.
  • Yang BT, Zhou Y, Min MS, Matsui M, Dong BJ, Li PP, Fong JJ. 2017. Diversity and phylogeography of Northeast Asian brown frogs allied to Rana dybowskii (Anura, Ranidae). Mol Phylogenet Evol. 112:148–157. doi:10.1016/j.ympev.2017.04.026.
  • Zhou Y, Yang B-T, Li P-P, Min M-S, Fong JJ, Dong B-J, Zhou Z-Y, Lu Y-Y. 2015. Molecular and morphological evidence for Rana kunyuensis as a junior synonym of Rana coreana (Anura: Ranidae). J Herpetol. 49(2):302–307. doi:10.1670/13-111.