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Mitogenome Report

The complete mitochondrial genome of Cuminum cyminum (Apiales: Apiaceae) and phylogenetic analysis

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Pages 760-765 | Received 18 Nov 2022, Accepted 13 Jul 2023, Published online: 27 Jul 2023

References

  • Adams KL, Palmer JD. 2003. Evolution of mitochondrial gene content: gene loss and transfer to the nucleus. Mol Phylogenet Evol. 29(3):380–395. doi: 10.1016/s1055-7903(03)00194-5.
  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19(5):455–477. doi: 10.1089/cmb.2012.0021.
  • Bremer B, Bremer K, Heidari N, Erixon P, Olmstead RG, Anderberg AA, Kallersjo M, Barkhordarian E. 2002. Phylogenetics of asterids based on 3 coding and 3 non-coding chloroplast DNA markers and the utility of non-coding DNA at higher taxonomic levels. Mol Phylogenet Evol. 24(2):274–301. doi: 10.1016/s1055-7903(02)00240-3.
  • Bi G, Mao Y, Xing Q, Cao M. 2018. Homblocks: a multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching. Genomics. 110(1):18–22. doi: 10.1016/j.ygeno.2017.08.001.
  • Cheng Q, Wang P, Li T, Liu J, Zhang Y, Wang Y, Sun L, Shen H. 2021. Complete mitochondrial genome sequence and identification of a candidate gene responsible for cytoplasmic male sterility in celery (Apium graveolens L.). Int J Mol Sci. 22(16):8584. doi: 10.3390/ijms22168584.
  • Kim CK, Jin MW, Kim YK. 2020. The complete mitochondrial genome sequences of Bupleurum falcatum (Apiales: apiaceae)[J]. Mitochondrial DNA B Resour. 5(3):2576–2577. doi: 10.1080/23802359.2020.1781566.
  • Kozik A, Rowan BA, Lavelle D, Berke L, Schranz ME, Michelmore RW, Christensen AC. 2019. The alternative reality of plant mitochondrial DNA: one ring does not rule them all. PLOS Genet. 15(8):e1008373. doi: 10.1371/journal.pgen.1008373.
  • Lang BF, Marie-Josée L, Burger G. 2007. Mitochondrial introns: a critical view. Trends Genet. 23(3):119–125. doi: 10.1016/j.tig.2007.01.006.
  • Lee HO, Choi JW, Baek JH, Oh JH, Lee SC, Kim CK. 2018. Assembly of the mitochondrial genome in the campanulaceae family using illumina low-coverage sequencing. Genes. 30,9(8):383.
  • Luo ZP, Pan LW. 2019. Characterization of the complete mitochondrial genome of Ageratum conyzoides. Mitochondrial DNA B Resour. 4(2):3540–3541. doi: 10.1080/23802359.2019.1676176.
  • Makarenko M, Usatov A, Tatarinova T, Azarin K, Kovalevich A, Gavrilova V, Horn R. 2020. The investigation of perennial sunflower species (Helianthus L.) mitochondrial genomes. Genes. 11(9):982. doi: 10.3390/genes11090982.
  • Makarenko MS, Omelchenko DO, Usatov AV, Gavrilova VA. 2021. The insights into mitochondrial genomes of sunflowers. Plants. 10(9):1774. doi: 10.3390/plants10091774.
  • Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274. doi: 10.1093/molbev/msu300.
  • Palmer JD, Adams KL, Cho Y, Parkinson CL, Qiu YL, Song K. 2000. Dynamic evolution of plant mitochondrial genomes: mobile genes and introns and highly variable mutation rates. Proc Natl Acad Sci USA. 97(13):6960–6999.
  • Sultanbawa Y. 2016. Cumin (Cuminum cyminum L.) oils. In: Preedy VR, editors. Essential oils in food preservation, flavor and safety. Cambridge: Academic Press. p. 377–383.
  • Song YY, Zhang TT, Tang H, Xu L, Xing YP, Zhao R, Bao GH, Li SN, Zhang DC, Qiao Y, et al. 2021. The complete mitochondrial genome of Aucklandia lappa Decne. (Asteraceae, Aucklandia Falc.). Mitochondrial DNA B Resour. 6(6):1691–1693. doi: 10.1080/23802359.2021.1914524.
  • Choi I-S, Wojciechowski MF, Ruhlman TA, Jansen RK. 2021. In and out: evolution of viral sequences in the mitochondrial genomes of legumes (Fabaceae). Mol Phylogenet Evol. 163:107236. doi: 10.1016/j.ympev.2021.107236.
  • Iorizzo M, Senalik D, Szklarczyk M, Grzebelus D, Spooner D, Simon P. 2012. De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome. BMC Plant Biol. 12:61. doi: 10.1186/1471-2229-12-61.
  • Ranwez V, Douzery EJP, Cambon C, Chantret N, Delsuc F. 2018. MACSE v2: toolkit for the alignment of coding sequences accounting for frameshifts and stop codons. Mol Biol Evol. 35(10):2582–2584. doi: 10.1093/molbev/msy159.
  • Singh RP, Gangadharappa HV, Kenganora M. 2017. Cuminum cyminum-a popular spice: an updated review. Pharmacogn J. 9(3):292–301. doi: 10.5530/pj.2017.3.51.
  • Vargas OM, Ortiz EM, Simpson BB. 2017. Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high-Andean diversification (Asteraceae: astereae: diplostephium). New Phytol. 214(4):1736–1750. doi: 10.1111/nph.14530.
  • Wick RR, Schultz MB, Zobel J, Holt KE. 2015. Bandage: interactive visualization of de novo genome assemblies. Bioinformatics. 31(20):3350–3352. doi: 10.1093/bioinformatics/btv383.
  • Won SY, Jung JA, Kim JS. 2018. The complete mitochondrial genome sequence of Chrysanthemum boreale (Asteraceae). Mitochondrial DNA Part B Resour. 3:529–530.
  • Zhang D, Gao F, Jakovlić I, Zou H, Zhang J, Li WX, Wang GT. 2020. PhyloSuite: an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. Mol Ecol Resour. 20(1):348–355. doi: 10.1111/1755-0998.13096.
  • Zhou HY, Deng HY, Kang RP, Wang Z, Aifeire A, Huang LD, Suo FY. 2023. The protective effect of cuminaldehyde on gastric mucosain Rattus norregicus of experimental gastric ulcer. Chin Pharmacol Bull. 39(5):946–952.