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Mitochondrial DNA Part B
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Volume 8, 2023 - Issue 7
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Plastome Report

The complete chloroplast genome sequence of Crepidomanes latealatum (Bosch) Copel

Ji Hye Honga Department of Forest Science, Chungbuk National University, Chungbuk, South KoreaView further author information
,
Sang Hee Parka Department of Forest Science, Chungbuk National University, Chungbuk, South KoreaView further author information
,
Hyoung Tae Kimb Department of Ecological and Environmental System, Kyungpook National University, Kyungpook, South KoreaCorrespondence[email protected]
View further author information
&
Jung Sung Kima Department of Forest Science, Chungbuk National University, Chungbuk, South KoreaCorrespondence[email protected]
View further author information
Pages 783-786 | Received 10 Apr 2023, Accepted 14 Jul 2023, Published online: 27 Jul 2023

References

  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for illumina sequence data. Bioinformat. 30(15):2114–2120. doi: 10.1093/bioinformatics/btu170.
  • Chernomor O, von Haeseler A, Minh BQ. 2016. Terrace aware data structure for phylogenomic inference from supermatrices. Syst Biol. 65(6):997–1008. doi: 10.1093/sysbio/syw037.
  • Copeland T. 1938. Genera Hymenophyllacearum. Philipp J Sci. 67(1):60–61.
  • Ebihara A, Dubuisson J-Y, Iwatsuki K, Hennequin S, Ito M. 2006. A taxonomic revision of Hymenophyllaceae. Blum J Plant Tax Plant Geog. 51(2):221–280. doi: 10.3767/000651906X622210.
  • Hassler M. 2021. Checklist of Ferns and Lycophytes of the World. In O. Bánki, Y. Roskov, L. Vandepitte, R. E. DeWalt, D. Remsen, P. Schalk, T. Orrell, M. Keping, J. Miller, R. Aalbu, R. Adlard, E. Adriaenssens, C. Aedo, E. Aescht, N. Akkari, M. A. Alonso-Zarazaga, B. Alvarez, F. Alvarez, G. Anderson, et al., Catalogue of Life Checklist (Version 2021-08-06).
  • Hoang DT, Chernomor O, von Haeseler A, Minh BQ, Vinh LS. 2018. UFBoot2: improving the ultrafast bootstrap approximation. Mol Biol Evol. 35(2):518–522. doi: 10.1093/molbev/msx281.
  • Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 14(6):587–589. doi: 10.1038/nmeth.4285.
  • Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30(14):3059–3066. doi: 10.1093/nar/gkf436.
  • Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformat. 28(12):1647–1649. doi: 10.1093/bioinformatics/bts199.
  • Kim CH, Moon MO, Ahn JG, Hwang IC, Lee SH, Choi SS, Bum HM, Cha JY. 2018. Floristic target species (FT species) in Korea. National Institute of Ecology Press, Seocheon, Korea; p. 728. (in Korean)
  • Kim HT, Chase MW. 2017. Independent degradation in genes of the plastid NDH gene family in species of the orchid genus Cymbidium (Orchidaceae: Epidendroideae). PLoS One. 12(11):e0187318. doi: 10.1371/journal.pone.0187318.
  • Kim HT, Chung MG, Kim KJ. 2014. Chloroplast genome evolution in early diverged leptosporangiate ferns. Mol Cells. 37(5):372–382. doi: 10.14348/molcells.2014.2296.
  • Kim HT, Kim JS. 2020. The dynamic evolution of mobile open reading frames in plastomes of Hymenophyllum Sm. and new insight on Hymenophyllum coreanum Nakai. Sci Rep. 10(1):11059. doi: 10.1038/s41598-020-68000-7.
  • Kuo LY, Qi X, Ma H, Li FW. 2018. Order-level fern plastome phylogenomics: new insights from Hymenophyllales. Am J Bot. 105(9):1545–1555. doi: 10.1002/ajb2.1152.
  • Lee CS, Lee K, Hwang Y. 2014. First record of Crepidomanes schmidtianum (Zenker ex Tasch.) K. Iwats. (Hymenophyllaceae) from Korea. Korean J Plant Taxonomy. 44(1):1–5. doi: 10.11110/kjpt.2014.44.1.1.
  • Lehtonen S. 2018. The complete plastid genome sequence of Trichomanes trollii (Hymenophyllaceae). Nordic J. Bot. 36:e02072.
  • Liu S, Ni Y, Li J, Zhang X, Yang H, Chen H, Liu C. 2023. CPGView: a package for visualizing detailed chloroplast genome structures. Mol Ecol Resour. 23(3):1–11.
  • Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, Von Haeseler A, Lanfear R. 2020. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Mol Biol Evol. 37(5):1530–1534. doi: 10.1093/molbev/msaa015.
  • Moon MO. 2008. Pteridophyte Flora of Jeju Island, Korea [Doctoral dissertation]. Jeju National University.
  • Patil S, Hande P, Dongare M. 2014. A Filmy Fern: Crepidomanes latealatum (bosch) Copel. New to Northern Western Ghats of India. Indian Forester. 140(9):939–940.
  • PPG I. 2016. A community-derived classification for extant lycophytes and ferns. J Syst Evol. 54(6):563–603.
  • Ruiz-Ruano FJ, Navarro-Domínguez B, Camacho JPM, Garrido-Ramos MA. 2019. Full plastome sequence of the fern Vandenboschia speciosa (Hymenophyllales): structural singularities and evolutionary insights. J Plant Res. 132(1):3–17. doi: 10.1007/s10265-018-1077-y.
  • Wang R, Zhao G, Wang Z, Lin Z, Jiang X, Lin S, Chan H, Hong Y, Zhang Y, Su Y, et al. 2022. The complete chloroplast genome of Vandenboschia striata, a common and widespread filmy fern (Hymenophyllaceae. Mitochondrial DNA B Resour. 7(1):128–129. doi: 10.1080/23802359.2021.2013744.

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