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Plastome Report

Complete assembly of the chloroplast genome of Amorphophallus coaetaneus S. Y. Liu & S. J. Wei 1986 (Araceae) from southwestern China

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Pages 766-770 | Received 29 Mar 2023, Accepted 15 Jul 2023, Published online: 25 Jul 2023

References

  • Claudel C, Buerki S, Chatrou LW, Antonelli A, Alvarez N, Hetterscheid W. 2017. Large-scale phylogenetic analysis of Amorphophallus (Araceae) derived from nuclear and plastid sequences reveals new subgeneric delineation. Botan J Linnean Soc. 184(1):32–45. doi:10.1093/botlinnean/box013.
  • Greiner S, Lehwark P, Bock R. 2019. OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes. Nucleic Acids Res. 47(W1):W59–W64. doi:10.1093/nar/gkz238.
  • Henriquez CL, Abdullah, Ahmed I, Carlsen MM, Zuluaga A, Croat TB, McKain MR. 2020a. Evolutionary dynamics of chloroplast genomes in subfamily Aroideae (Araceae). Genomics. 112(3): 2349–2360. doi:10.1016/j.ygeno.2020.01.006.
  • Henriquez, CL, Abdullah, Ahmed I, Carlsen MM, Zuluaga A, Croat TB, McKain MR. 2020b. Molecular evolution of chloroplast genomes in Monsteroideae (Araceae). Planta. 251(3): 72. doi:10.1007/s00425-020-03365-7.
  • Hu H, Liu J, Wang B, An J, Wang Q. 2019. Characterization of the complete chloroplast genome of Amorphophallus konjac (Araceae) and its phylogenetic analysis. Mitochondrial DNA Part B. 4(1):1658–1659. doi:10.1080/23802359.2019.1606683.
  • Jin J-J, Yu W-B, Yang J-B, Song Y, dePamphilis CW, Yi T-S, Li D-Z. 2020. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21(1):241. doi:10.1186/s13059-020-02154-5.
  • Kalyaanamoorthy S, Minh BQ, Wong T, Haeseler AV, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 14(6):587–589. doi:10.1038/nmeth.4285.
  • Katoh K, Standley D. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780. doi:10.1093/molbev/mst010.
  • Kim J, Lee J, Choi S, Um S, Kim H, Chun HS, Nah G. 2020. The complete chloroplast genome of Typhonium giganteum (Araceae). Mitochondrial DNA B Resour. 5(3):2994–2995. doi:10.1080/23802359.2020.1797571.
  • Li H, Zhu G, Boyce PC, Jin M, Hetterscheid WLA, Bogner J, Jacobsen N. 2010. Araceae. Flora of China. Beijing: science Press.
  • Low SL, Yu C-C, Ooi IH, Eiadthong W, Galloway A, Zhou Z-K, Xing Y-W. 2021. Extensive Miocene speciation in and out of Indochina: the biogeographic history of Typhonium sensu stricto (Araceae) and its implication for the assembly of Indochina flora. J Syst Evol. 59(3):419–428. doi:10.1111/jse.12689.
  • Mayo SJ, Bogner J, Boyce PC. 1997. The genera of Araceae. Kew: Royal Botanic Gardens.
  • Mehmood F, Abdullah, Shahzadi I, Ahmed I, Waheed MT, Mirza B. 2020. Characterization of Withania somnifera chloroplast genome and its comparison with other selected species of Solanaceae. Genomics. 112(2): 1522–1530. doi:10.1016/j.ygeno.2019.08.024.
  • Mehmood F, Abdullah, Ubaid Z, Bao Y, Poczai P, Mirza B. 2020. Comparative plastomics of Ashwagandha (Withania, Solanaceae) and identification of mutational hotspots for barcoding medicinal plants. Plants. 9(6): 752. doi:10.3390/plants9060752.
  • Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution. 32(1):268–274. doi:10.1093/molbev/msu300.
  • Pouchon C, Gauthier J, Pitteloud C, Claudel C, Alvarez N. 2023. Phylogenomic study of Amorphophallus (Alismatales; Araceae): When plastid DNA gene sequences help to resolve the backbone subgeneric delineation. J of Sytematics Evolution. 61(1):64–79. doi:10.1111/jse.12910.
  • Shi L, Chen H, Jiang M, Wang L, Wu X, Huang L, Liu C. 2019. CPGAVAS2, an integrated plastome sequence annotator and analyzer. Nucleic Acids Res. 47(W1):W65–W73. doi:10.1093/nar/gkz345.
  • Srzednicki G, Borompichaichartkul C. 2020. Konjac Glucomannan-Production, Processing, and Functional Applications. Boca Raton: CRC Press.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq – versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–W11. doi:10.1093/nar/gkx391.
  • Yin S, Chu H, Zhang Y, Lu F, Gao Y. 2021. Population genetic diversity and genetic structure of Amorphophallus yunnanensis in Southwestern China and its conservation implication. Taiwania. 66(2):126–134.