Complete chloroplast genome of Lonicera ligustrina Wall. (Caprifoliaceae) and its phylogenetic implications

References

• Chen C, Qu DH, Shan FQ, Jin ZX, Sun ZS. 2022. Complete chloroplast genome of Lonicera crassifolia Batalin (Caprifoliaceae) and its phylogenetic implications. Mitochondrial DNA B Resour. 7(5):732–734. doi: 10.1080/23802359.2022.2068979.
   PubMed Web of Science ®Google Scholar
• Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18. doi: 10.1093/nar/gkw955.
   Google Scholar
• Fan WB, Wu Y, Yang J, Shahzad K, Li ZH. 2018. Comparative chloroplast genomics of Dipsacales species: insights into sequence variation, adaptive evolution, and phylogenetic relationships. Front Plant Sci. 9:689. doi: 10.3389/fpls.2018.00689.
   PubMed Web of Science ®Google Scholar
• Gu L, Hou Y, Wang G, Liu Q, Ding W, Weng Q. 2022. Characterization of the chloroplast genome of Lonicera ruprechtiana Regel and comparison with other selected species of Caprifoliaceae. PLoS One. 17(1):e0262813. doi: 10.1371/journal.pone.0262813.
   PubMed Web of Science ®Google Scholar
• Gu L, Wu Q, Yi Y, Yu Z. 2021. The complete chloroplast genome of Lonicera hypoglauca Miq (Caprifoliaceae: dipsacales) from Guangxi, China. Mitochondrial DNA B Resour. 6(2):450–451. doi: 10.1080/23802359.2020.1870903.
   PubMed Web of Science ®Google Scholar
• He L, Qian J, Li X, Sun Z, Xu X, Chen S. 2017. Complete chloroplast genome of medicinal plant Lonicera japonica: genome rearrangement, intron gain and loss, and implications for phylogenetic studies. Molecules. 22(2):249. doi: 10.3390/molecules22020249.
   PubMed Web of Science ®Google Scholar
• Hsu PS, Wang HJ. 1988. Lonicera. In: Hsu PS, editor. Flora reipublicae popularis sinicae. Vol. 72. Beijing: Science Press; p. 143–259.
   Google Scholar
• Hu H, Liu J, An J, Wang M, Wang Q. 2018. Characterization of the complete chloroplast genome of Lonicera macranthoides. Mitochondrial DNA B Resour. 3(2):1000–1001. doi: 10.1080/23802359.2018.1507643.
   PubMed Web of Science ®Google Scholar
• Jacobs B, Lens F, Smets E. 2009. Evolution of fruit and seed characters in the Diervilla and Lonicera clades (Caprifoliaceae, Dipsacales). Ann Bot. 104(2):253–276. doi: 10.1093/aob/mcp131.
   PubMed Web of Science ®Google Scholar
• Jia G, Wang H, Yu P, Li P. 2020. The complete chloroplast genome of the Lonicera maackii (Caprifoliaceae), an ornamental plant. Mitochondrial DNA B Resour. 5(1):560–561. doi: 10.1080/23802359.2019.1710288.
   PubMed Web of Science ®Google Scholar
• Jiang C, Wu S, Feng X, Yang C, Yu Z. 2021. The complete chloroplast genome of Lonicera pampaninii Levl. and its phylogenetic analysis. Mitochondrial DNA B Resour. 6(10):3025–3027. doi: 10.1080/23802359.2021.1978891.
   PubMed Web of Science ®Google Scholar
• Liu HR, Fang J, Xia M, Xiao Q, Zhang D, Xie J, Chen S. 2019. The complete chloroplast genome of Triosteum himalayanum (Caprifoliaceae), a perennial alpine herb. Mitochondrial DNA B Resour. 4(2):4194–4195. doi: 10.1080/23802359.2019.1693289.
   PubMed Web of Science ®Google Scholar
• Liu ML, Fan WB, Wang N, Dong PB, Zhang TT, Yue M, Li ZH. 2018. Evolutionary analysis of plastid genomes of seven Lonicera L. species: implications for sequence divergence and phylogenetic relationships. Int J Mol Sci. 19(12):4039. doi: 10.3390/ijms19124039.
   PubMed Web of Science ®Google Scholar
• Liu S, Ni Y, Li J, Zhang X, Yang H, Chen H, Liu C. 2023. CPGView: a package for visualizing detailed chloroplast genome structures. Mol Ecol Resour. 23:1–11.
   PubMed Web of Science ®Google Scholar
• Miller MA, Pfeiffer W, Schwartz T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Gatew Comput Environ Workshop. 14:1–8.
   Google Scholar
• Murthy C, Sanapala AK, Sambamoorthy U, Kasireddy P, Namratha S. 2022. Phytochemical screening and Invitro Anticancer activity of Lonicera ligustrina leaf extract on Breast and Colorectal carcinoma cell lines. RJPT. 3485–3489. doi: 10.52711/0974-360X.2022.00584.
   Google Scholar
• Nakaji M, Tanaka N, Sugawara T. 2015. A molecular phylogenetic study of Lonicera L. (Caprifoliaceae) in Japan based on chloroplast DNA sequences. Acta Phytotaxon Geobot. 66(3):137–151.
   Web of Science ®Google Scholar
• Rehder A. 1903. Synopsis of the genus Lonicera. Missouri Bot Gard Ann Rep. 1903:27. doi: 10.2307/2400049.
   Google Scholar
• Rehder A. 1913. Caprifoliaceae. In: Sargent CS, editor. Plantae wilsonianae: an enumeration of the woody plants collected in western China for the arnold arboretum of harvard university during the years 1907, 1908, and 1910. Cambridge: Harvard University Press; p. 106–144.
   Google Scholar
• Ren MT, Chen J, Song Y, Sheng LS, Li P, Qi LW. 2008. Identification and quantification of 32 bioactive compounds in Lonicera species by high performance liquid chromatography coupled with time-of-flight mass spectrometry. J Pharm Biomed Anal. 48(5):1351–1360. doi: 10.1016/j.jpba.2008.09.037.
   PubMed Web of Science ®Google Scholar
• Shen XL, Zhu YX, Wu YM, Tong L, Mu XY. 2019. The complete chloroplast genome of Symphoricarpos orbiculatus (Caprifoliaceae), an important ornamental plant. Mitochondrial DNA B Resour. 4(2):3173–3174. doi: 10.1080/23802359.2019.1668310.
   PubMed Web of Science ®Google Scholar
• Smith SA, Donoghue MJ. 2010. Combining historical biogeography with niche modeling in the Caprifolium clade of Lonicera (Caprifoliaceae, Dipsacales). Syst Biol. 59(3):322–341. doi: 10.1093/sysbio/syq011.
   PubMed Web of Science ®Google Scholar
• Theis N, Donoghue MJ, Li JH. 2008. Phylogenetics of the Caprifolieae and Lonicera (Dipsacales) based on nuclear and chloroplast DNA sequences. Syst Bot. 33(4):776–783. doi: 10.1600/036364408786500163.
   Web of Science ®Google Scholar
• Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq-versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–W11. doi: 10.1093/nar/gkx391.
   PubMed Web of Science ®Google Scholar
• Wang HX, Liu H, Moore MJ, Landrein S, Liu B, Zhu ZX, Wang HF. 2020. Plastid phylogenomic insights into the evolution of the Caprifoliaceae s.l. (Dipsacales). Mol Phylogenet Evol. 142:106641. doi: 10.1016/j.ympev.2019.106641.
   PubMed Web of Science ®Google Scholar
• Wang HX, Tan XH, Wang JH, Zhao KK, Zhu ZX, Wang HF. 2019. Complete plastome sequence of Heptacodium miconioides Rehd. (Caprifoliaceae): an Endangered (EN) plant species endemic to China. Mitochondrial DNA Part B Resour. 4(1):64–65. doi: 10.1080/23802359.2018.1536457.
   Web of Science ®Google Scholar
• Wu YM, Ma D, Zhu YX, Liu B, Mu XY. 2021. Characterization of the complete chloroplast genome of a subalpine deciduous shrub Lonicera angustifolia var. myrtillus (Caprifoliaceae). Mitochondrial DNA B Resour. 6(7):1796–1798. doi: 10.1080/23802359.2021.1931507.
   PubMed Web of Science ®Google Scholar
• Yang QE, Landrein S. 2011. Lonicera linnaeus. In: Raven PH, Wu ZY, Hong DY, editors. Flora of China. Vol. 19. Beijing: Science Press; p. 620–641.
   Google Scholar
• Yashodha A, Parveen H, Begum S, Santhoshi G, Bharath M, Ashok A. 2019. A study on phytochemical & anti-nociceptive activity of Lonicera ligustrina leaf extract. Int J of Allied Med Sci and Clin Res. 7(3):679–687.
   Google Scholar
• Yu Z, Yi Y, Gu L. 2021. The complete chloroplast genome of Lonicera fulvotomentosa Hsu et S. C. Cheng and its phylogenetic analysis. Mitochondrial DNA B Resour. 6(3):842–843. doi: 10.1080/23802359.2021.1884027.
   PubMedGoogle Scholar
• Yuan W, Ma Y, He S, Chang D, He Y. 2021. Characterization of the complete chloroplast genome of Lonicera tatarica L. (Caprifoliaceae). Mitochondrial DNA B Resour. 6(7):1871–1872. doi: 10.1080/23802359.2021.1934140.
   PubMed Web of Science ®Google Scholar
• Zeng YP, Luo YF, Yang QE. 2021. Reinstatement of Lonicera tricalysioides (Caprifoliaceae) as a distinctive species from china. Phytotaxa. 490(2):183–190. doi: 10.11646/phytotaxa.490.2.4.
   Web of Science ®Google Scholar
• Zhang H. 2020. Characterization of the complete chloroplast genome of Leycesteria formosa wall. (Caprifoliaceae), a medicinal plant in southwest China. Mitochondrial DNA B Resour. 5(1):500–501. doi: 10.1080/23802359.2019.1704652.
   PubMed Web of Science ®Google Scholar
• Zhang Y, Zhang QY, Ran H, Cao Y. 2020. Characteristic of the complete chloroplast genome of Symphoricarpos sinensis, an important ornamental plant endemic to China. Mitochondrial DNA B Resour. 5(3):3170–3171. doi: 10.1080/23802359.2020.1807423.
   PubMed Web of Science ®Google Scholar