Complete mitochondrial genome of the Themus foveicollis (Coleoptera: Cantharidae)

References

• Amaral DT, Mitani Y, Ohmiya Y, Viviani VR. 2016. Organization and comparative analysis of the mitochondrial genomes of bioluminescent Elateroidea (Coleoptera: polyphaga). Gene. 586(2):254–C2. doi:10.1016/j.gene.2016.04.009.
   PubMed Web of Science ®Google Scholar
• Balduf WV. 1935. The bionomics of entomophagous coleoptera. New York (NY): J. S. Swift; p. 220.
   Google Scholar
• Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319. doi:10.1016/j.ympev.2012.08.023.
   PubMed Web of Science ®Google Scholar
• Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T. 2009. TrimAI: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics. 25(15):1972–1973. doi:10.1093/bioinformatics/btp348.
   PubMed Web of Science ®Google Scholar
• Chen X, Dong Z, Liu G, He J, Zhao R, Wang W, Peng Y, Li X. 2019. Phylogenetic analysis provides insights into the evolution of Asian fireflies and adult bioluminescence. Mol Phylogenet Evol. 140:106600. doi:10.1016/j.ympev.2019.106600.
   PubMed Web of Science ®Google Scholar
• Clary DO, Wolstenholme DR. 1985. The mitochondrial DNA molecule of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code. J Mol Evol. 22(3):252–271. doi:10.1007/BF02099755.
   PubMed Web of Science ®Google Scholar
• Delkeskamp K. 1977. Cantharidae. In: Wilcox JA, editor. Coleopterorum catalogus supplementa, Pars 165, Fasc. 1. Vol. 2. Holland: W. Junk, Hague; p. 1–485.
   Google Scholar
• Delkeskamp K. 1978. Cantharidae. Corrigenda et addenda. In: Wilcox JA, editor. Coleopterorum catalogus supplementa, Pars 165, Fasc. 2. Vol. 2. Holland: W. Junk, Hague; p. 487–556.
   Google Scholar
• Fairmaire L. 1900. Description de Coléoptères nouveaux recueillis en Chine par M. de Latouche. Ann Soc Entomol France. 68(1899):616–649.
   Google Scholar
• Gerritsen AT, New DD, Robison BD, Rashed A, Hohenlohe P, Forney L, Rashidi M, Wilson CM, Settles ML. 2016. Full mitochondrial genome sequence of the sugar beet wireworm Limonius californicus (Coleoptera: Elateridae), a common agricultural pest. Genome Announc. 4(1):e01628–e01615. doi:10.1128/genomeA.01628-15.
   PubMedGoogle Scholar
• Janssen W. 1963. Untersuchungen zur morphologie, biologie und okologie von cantharis L. und Rhagonycha Eschsch (Cantharidae, Col). Zeitschrift Wissenschaftliche Zool. 169:115–202.
   Google Scholar
• Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780. doi:10.1093/molbev/mst010.
   PubMed Web of Science ®Google Scholar
• Kazantsev SV, Brancucci M. 2007. Cantharidae. In Löbl I, Smetana A, editor. Catalogue of palaearctic coleoptera. Vol. 4. Stenstrup, Denmark: Apollo Books; p. 234–298.
   Google Scholar
• Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649. doi:10.1093/bioinformatics/bts199.
   PubMed Web of Science ®Google Scholar
• Lanfear R, Calcott B, Ho SY, Guindon S. 2012. PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol Biol Evol. 29(6):1695–1701. doi:10.1093/molbev/mss020.
   PubMed Web of Science ®Google Scholar
• Langenstück C, Heimbach U, Larink O. 1998. Larven der Cantharidae (Insecta: coleoptera) auf Ackerflächen in So-Niedersachsen und Aspekte ihrer Biologie. Braunschweiger Naturkundliche Schriften. 5:551–568.
   Google Scholar
• Letunic I, Bork P. 2021. Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation. Nucleic Acids Res. 49(W1):W293–W296. doi:10.1093/nar/gkab301.
   PubMed Web of Science ®Google Scholar
• Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows–Wheeler transform. Bioinformatics. 25(14):1754–1760. doi:10.1093/bioinformatics/btp324.
   PubMed Web of Science ®Google Scholar
• Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 2009. The sequence alignment/map format and SAMtools. Bioinformatics. 25(16):2078–2079. doi:10.1093/bioinformatics/btp352.
   PubMed Web of Science ®Google Scholar
• Li W, Liu Q, Fu X. 2022. The complete mitochondrial genome of the firefly Curtos fulvocapitalis (Coleoptera: Lampyridae). Mitochondrial DNA B Resour. 7(1):1–3. doi:10.1080/23802359.2021.1958080.
   PubMed Web of Science ®Google Scholar
• Linard B, Arribas P, Andújar C, Crampton-Platt A, Vogler AP. 2016. Lessons from genome skimming of arthropod-preserving ethanol. Mol Ecol Resour. 16(6):1365–1377. doi:10.1111/1755-0998.12539.
   PubMed Web of Science ®Google Scholar
• Lin A, Zhao X, Song N, Zhao T. 2018. Analysis of the complete mitochondrial genome of click beetle Agriotes hirayamai (Coleoptera: Elateridae). Mitochondrial DNA B Resour. 3(1):290–291. doi:10.1080/23802359.2018.1443041.
   PubMed Web of Science ®Google Scholar
• Li X, Ogoh K, Ohba N, Liang X, Ohmiya Y. 2007. Mitochondrial genomes of two luminous beetles, Rhagophthalmus lufengensis and R. ohbai (Arthropoda, Insecta, Coleoptera). Gene. 392(1–2):196–205. doi:10.1016/j.gene.2006.12.017.
   PubMed Web of Science ®Google Scholar
• Liu HY, Kang ZX, Zhang F, Ge XY, Yang YX. 2019. The complete mitogenome of Lycostomus sp. (Elateroidea: Lycidae). Mitochondrial DNA B Resour. 4(2):3813–3815. doi:10.1080/23802359.2019.1682483.
   PubMed Web of Science ®Google Scholar
• Lohse M, Drechsel O, Bock R. 2007. Organellar Genome DRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes. Curr Genet. 52(5–6):267–274. doi:10.1007/s00294-007-0161-y.
   PubMed Web of Science ®Google Scholar
• Maurano MT, Humbert R, Rynes E, Thurman RE, Haugen E, Wang H, Reynolds AP, Sandstrom R, Qu H, Brody J, et al. 2012. Systematic localization of common disease-associated variation in regulatory DNA. Science. 337(6099):1190–1195. doi:10.1126/science.1222794.
   PubMed Web of Science ®Google Scholar
• Nguyen LT, Schmidt HA, Von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274. doi:10.1093/molbev/msu300.
   PubMed Web of Science ®Google Scholar
• Peng Y, Leung HC, Yiu SM, Chin, FY, 11. 2012. IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. Bioinformatics. 28(11):1420–1428. doi:10.1093/bioinformatics/bts174.
   PubMed Web of Science ®Google Scholar
• Ramsdale AS. 2010. Cantharidae Imhoff, 1856. In: Leschen RAB, Beutel RG, Lawrence JF, editors. Coleoptera, beetles, handbuch der zoologie [Handbook of zoology], Vol. 2. Berlin, Germany: Walter de Gruyter Inc.; p. 153–162.
   Google Scholar
• Raupach MJ, Deister F, Villastrigo A, Balke M. 2022. The complete mitochondrial genomes of Notiophilus quadripunctatus Dejean, 1826 and Omophron limbatum (Fabricius, 1777): new insights into the mitogenome phylogeny of the Carabidae (Insecta, Coleoptera). Insect Syst Evol. 53(3):242–263. doi:10.1163/1876312X-bja10027.
   Web of Science ®Google Scholar
• Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: bayesian phylogenetic inference under mixed models. Bioinformatics. 19(12):1572–1574. doi:10.1093/bioinformatics/btg180.
   PubMed Web of Science ®Google Scholar
• Sheffield NC, Song H, Cameron SL, Whiting MF. 2009. Nonstationary evolution and compositional heterogeneity in beetle mitochondrial phylogenomics. Syst Biol. 58(4):381–394. doi:10.1093/sysbio/syp037.
   PubMed Web of Science ®Google Scholar
• Švihla V. 2008. Redescription of the subgenera of the genus Themus Motschulsky, 1858, with description of five new species (Coleoptera: cantharidae). Veröffentlichungen Naturkundemuseums Erfurt. 27:183–190.
   Google Scholar
• Uribe JE, Gutiérrez-Rodríguez J. 2016. The complete mitogenome of the trilobite beetle, Platerodrilus sp. (Elateroidea: Lycidae). Mitochondrial DNA B Resour. 1(1):658–659. doi:10.1080/23802359.2016.1219626.
   PubMed Web of Science ®Google Scholar
• Wang Y, Liu Y. 2019. The complete mitochondrial genome of Melanotus cribricollis (Coleoptera: Elateridae) and phylogenetic analysis. Mitochondrial DNA B Resour. 4(2):3238–3239. doi:10.1080/23802359.2019.1669085.
   PubMed Web of Science ®Google Scholar
• Wang P, Yuan LL, Ge XY, Liu HY, Yang YX. 2019. The complete mitochondrial genome sequence and phylogenetic analysis of Lycocerus asperipennis (Coleoptera: cantharidae). Mitochondrial DNA B Resour. 4(2):3768–3769. doi:10.1080/23802359.2019.1682478.
   PubMed Web of Science ®Google Scholar
• Xi HC, Ge SJ, Kang ZX, Liu HY, Yang YX. 2020. The complete mitochondrial genome sequence and phylogenetic analysis of Cantharis plagiata (Coleoptera, Canthridae). Mitochondrial DNA B Resour. 5(3):2386–2388. doi:10.1080/23802359.2020.1775515.
   PubMed Web of Science ®Google Scholar
• Yang Z, Fu X. 2019. The complete mitochondrial genome of the firefly, Diaphanes citrinus (Olivier), (Coleoptera: Lampyridae). Mitochondrial DNA B Resour. 4(2):2986–2987. doi:10.1080/23802359.2019.1664351.
   PubMed Web of Science ®Google Scholar
• Yang Y, Kopetz A, Yang X. 2013. Taxonomic and nomenclatural notes on the genera Themus Motschulsky and Lycocerus Gorham (Coleoptera, Cantharidae). Zookeys. 340(340):1–19. doi:10.3897/zookeys.340.5470.
   Google Scholar
• Yang YX, Lu YY, Yang XK. 2012. Four newly recorded to China species of the genus Themus Motschulsky, 1857 (Coleoptera: Cantharidae). Far Eastern Entomol. 242:1–6.
   Google Scholar
• Yuan L, Ge X, Xie G, Liu H, Yang YX. 2021. First Complete mitochondrial genome of Melyridae (Coleoptera, Cleroidea): genome description and phylogenetic implications. Insects. 12(2):87. doi:10.3390/insects12020087.
   PubMed Web of Science ®Google Scholar
• Zhang D, Gao F, Jakovlić I, Zou H, Zhang J, Li WX, Wang GT. 2020. PhyloSuite: an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. Mol Ecol Resour. 20(1):348–355. doi:10.1111/1755-0998.13096.
   PubMed Web of Science ®Google Scholar