The study on the complete mitochondrial genome of Acanthopsetta nadeshnyi and its phylogenetic position

References

• Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319. doi: 10.1016/j.ympev.2012.08.023.
   PubMed Web of Science ®Google Scholar
• Bo Z, Wenping S, Kefeng L, Debin Z, Chao M, Guangxia X. 2016. The complete mitochondrial genome of Cleithenes herzenstein and its phylogenetic analysis. Mitochondrial DNA Part A DNA Mapp Seq Anal. 27(5):3663–3665. doi: 10.3109/19401736.2015.1079845.
   PubMed Web of Science ®Google Scholar
• Chae JY, Kim JH, Kang TW, Kim DG, Lee HH, Kim MS. 2022. The complete mitochondrial genome of Pseudopleuronectes herzensteini. Mitochondrial DNA Part B Resour. 7(7):1305–1307. doi: 10.1080/23802359.2022.2095234.
   PubMed Web of Science ®Google Scholar
• Gong L, Shi W, Si LZ, Kong XY. 2013. Rearrangement of mitochondrial genome in fishes. Zool Res. 34(6):666–673.
   Google Scholar
• Grant JR, Stothard P. 2008. The CGView Server: a comparative genomics tool for circular genomes. Nucleic Acids Res. 36(Web Server issue):W181–W184. doi: 10.1093/nar/gkn179.
   PubMedGoogle Scholar
• He C, Han J, Ge L, Zhou Z, Gao X, Mu Y, Liu W, Cao J, Liu Z, He C, et al. 2008. Sequence and organization of the complete mitochondrial genomes of spotted halibut (Verasper variegatus) and barfin flounder (Verasper moseri). DNA Seq. 19(3):246–255. doi: 10.1080/10425170701563303.
   PubMed Web of Science ®Google Scholar
• Johnson M, Zaretskaya I, Raytselis Y, Merezhuk Y, McGinnis S, Madden TL. 2008. NCBI BLAST: a better web interface. Nucleic Acids Res. 36(Web Server issue):W5–W9. doi: 10.1093/nar/gkn201.
   PubMed Web of Science ®Google Scholar
• Jordan DS, Goss DK. 1889. A review of the flounders and soles (Pleuronectidae) of America and Europe.
   Google Scholar
• Kim YJ, Jang YS. 2022. Comparative analysis of mitochondrial genomes of Pleuronectidae (Pleuronectiformes) in the seas around the Korean Peninsula. KOFFST International Conference 2022. p. 242–242.
   Google Scholar
• Kolesnikov AA, Gerasimov ES. 2012. Diversity of mitochondrial genome organization. Biochemistry. 77(13):1424–1435. doi: 10.1134/S0006297912130020.
   PubMed Web of Science ®Google Scholar
• Lim HK, Jung HS, Yoon M, Lee SH, Kim DS. 2019. Complete mitochondrial genomes of two Pleuronectid species: Clidoderma asperrimum and Verasper variegatus (Teleostei: Pleuronectiformes: Pleuronectidae). Mitochondrial DNA Part B Resour. 4(2):3931–3932. doi: 10.1080/23802359.2019.1687343.
   PubMed Web of Science ®Google Scholar
• Liu J, Tan C, Xiao K, Wang B, Liu X, Du H. 2017. The complete mitochondrial genome of Dabry’s sturgeon (Acipenser dabryanus). Mitochondrial DNA Part B Resour. 2(1):54–55. doi: 10.1080/23802359.2017.1280698.
   PubMed Web of Science ®Google Scholar
• Martin M. 2011. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet j. 17(1):10–12. doi: 10.14806/ej.17.1.200.
   Google Scholar
• Masuda H, Amaoka K, Araga C, Uyeno T, Yoshino T. 1984. The Fishes of the Japanese Archipelago. 1
   Google Scholar
• Matarese AC, Kendall AW, Jr Blood DM, Vinter BM. 1987. Laboratory guide to early life history stages of Northeast Pacific Fishes. Laguna. 53:56.
   Google Scholar
• Miya M, Kawaguchi A, Nishida M. 2001. Mitogenomic exploration of higher teleostean phylogenies: a case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial DNA sequences. Mol Biol Evol. 18(11):1993–2009. doi: 10.1093/oxfordjournals.molbev.a003741.
   PubMed Web of Science ®Google Scholar
• Miya M, Takeshima H, Endo H, Ishiguro NB, Inoue JG, Mukai T, Satoh TP, Yamaguchi M, Kawaguchi A, Mabuchi K, et al. 2003. Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences. Mol Phylogenet Evol. 26(1):121–138. doi: 10.1016/s1055-7903(02)00332-9.
   PubMed Web of Science ®Google Scholar
• Mjelle KA, Karlsen BO, Jørgensen TE, Moum T, Johansen SD. 2008. Halibut mitochondrial genomes contain extensive heteroplasmic tandem repeat arrays involved in DNA recombination. BMC Genomics. 9(1):10. doi: 10.1186/1471-2164-9-10.
   PubMedGoogle Scholar
• Nelson JS, Grande TC, Wilson MV. 2016. Fishes of the World. New York: John Wiley & Sons.
   Google Scholar
• Norman JR. 1934. A systematic monograph of the flatfishes (Heterosomata). London: Bulletin of the British Museum (Natural History).
   Google Scholar
• Pardo BG, Machordom A, Foresti F, Porto-Foresti F, Azevedo MF, Bañon R, Sánchez L, Martínez P. 2005. Phylogenetic analysis of flatfish (Order Pleuronectiformes) based on mitochondrial 16s rDNA sequences. Sci Mar. 69(4):531–543. doi: 10.3989/scimar.2005.69n4531.
   Web of Science ®Google Scholar
• Shi W, Dong XL, Wang ZM, Miao XG, Wang SY, Kong XY. 2013. Complete mitogenome sequences of four flatfishes (Pleuronectiformes) reveal a novel gene arrangement of L-strand coding genes. BMC Ecol Evol. 13(1):1–9.
   Google Scholar
• Song Y, Song N, Zhou Y, Li P, Zhao S, Gao T. 2017. Complete mitochondrial genome of the Pleuronichthys lighti (Pleuronectiformes, Pleuronectidae) with phylogenetic consideration. Genes Genom. 39(11):1271–1284. doi: 10.1007/s13258-017-0570-3.
   Web of Science ®Google Scholar
• Tamura K, Stecher G, Kumar S. 2021. MEGA11: molecular evolutionary genetics analysis version 11. Mol Biol Evol. 38(7):3022–3027. doi: 10.1093/molbev/msab120.
   PubMed Web of Science ®Google Scholar
• Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PD. 2005. DNA barcoding Australia’s fish species. Philos Trans R Soc Lond B Biol Sci. 360(1462):1847–1857. doi: 10.1098/rstb.2005.1716.
   PubMed Web of Science ®Google Scholar
• Zheng F, Liu H, Zhang Y, Wang Q, Wang B. 2016. Complete mitochondrial genome of the Pseudopleuronectes yokohamae (Pleuronectiforll: pleuronectidae). Mitochondrial DNA Part A DNA Mapp Seq Anal. 27(6):4347–4348. doi: 10.3109/19401736.2015.1089494.
   PubMed Web of Science ®Google Scholar