Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 8, 2023 - Issue 8
Submit an article Journal homepage
432
Views
0
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

Complete mitochondrial genome sequence and phylogenetic analysis of the Taiwan tai Argyrops bleekeri (Spariformes: Sparidae)

Hanye ZhangKey Laboratory of East China Sea Fishery Resources Exploitation, Ministry of Agriculture and Rural Affairs, East China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Shanghai, ChinaCorrespondence[email protected]
View further author information
,
Xiaojing SongKey Laboratory of East China Sea Fishery Resources Exploitation, Ministry of Agriculture and Rural Affairs, East China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Shanghai, ChinaView further author information
,
Zunlei LiuKey Laboratory of East China Sea Fishery Resources Exploitation, Ministry of Agriculture and Rural Affairs, East China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Shanghai, ChinaView further author information
&
Jianzhong LingKey Laboratory of East China Sea Fishery Resources Exploitation, Ministry of Agriculture and Rural Affairs, East China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Shanghai, ChinaView further author information
Pages 912-915 | Received 23 Sep 2021, Accepted 09 Aug 2023, Published online: 25 Aug 2023

References

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19(5):455–477. doi: 10.1089/cmb.2012.0021.
  • Caputi L, Osca D, Ceruso M, Venuti I, Sepe RM, Anastasio A, D'Aniello S, Crocetta F, Pepe T, Sordino P. 2021. The complete mitochondrial genome of the white seabream Diplodus sargus (Perciformes: Sparidae) from the Tyrrhenian Sea. Mitochondrial DNA B Resour. 6(9):2581–2583. doi: 10.1080/23802359.2021.1915209.
  • Celestina M, Marina C, Claudia C, Giuseppe P, Aniello A, Paolo S, Tiziana P. 2019. The complete mitochondrial genome of the Angolan dentex Dentex angolensis (Perciformes: Sparidae). Mitochondr DNA B. 4(1):1245–1246.
  • Coil D, Jospin G, Darling A. 2015. A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data. Bioinformatics. 31(4):587–589. doi: 10.1093/bioinformatics/btu661.
  • Greiner S, Lehwark P, Bock R. 2019. OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes. Nucleic Acids Res. 47(W1):W59–W64. doi: 10.1093/nar/gkz238.
  • Iwasaki W, Fukunaga T, Isagozawa R, Yamada K, Maeda Y, Satoh TP, Sado T, Mabuchi K, Takeshima H, Miya M, et al. 2013. MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline. Mol Biol Evol. 30(11):2531–2540. doi: 10.1093/molbev/mst141.
  • Iwatsuki Y, Heemstra PC. 2018. Taxonomic review of the genus Argyrops (Perciformes; Sparidae) with three new species from the Indo-West Pacific. Zootaxa. 4438(3):401–442. doi: 10.11646/zootaxa.4438.3.1.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780. doi: 10.1093/molbev/mst010.
  • Kawai K, Fujita H, Umino T. 2022. The complete mitochondrial genome of Acanthopagrus pacificus (Perciformes, Sparidae) from Iriomotejima Island, Okinawa, Japan. Mitochondrial DNA B Resour. 7(6):1027–1029. doi: 10.1080/23802359.2022.2080606.
  • Lanfear R, Frandsen PB, Wright AM, Senfeld T, Calcott B. 2017. PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Mol Biol Evol. 34(3):772–773. doi: 10.1093/molbev/msw260.
  • Minh BQ, Nguyen MAT, von Haeseler A. 2013. Ultrafast approximation for phylogenetic bootstrap. Mol Biol Evol. 30(5):1188–1195. doi: 10.1093/molbev/mst024.
  • Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274. doi: 10.1093/molbev/msu300.
  • Osca D, Caputi L, Tanduo V, Sepe RM, Liberti A, Tiralongo F, Venuti I, Ceruso M, Crocetta F, Sordino P, et al. 2022. The complete mitochondrial genome of the zebra seabream Diplodus cervinus (Perciformes, Sparidae) from the Mediterranean Sea. Mitochondrial DNA B Resour. 7(11):2006–2008. doi: 10.1080/23802359.2022.2145174.
  • Pan C, Gao C, Chen T, Chen X, Yang C, Zeng D, Feng P, Jiang W, Peng M. 2021. The complete mitochondrial genome of yellowfin seabream, Acanthopagrus latus (Percoiformes, Sparidae) from Beibu Bay. Mitochondrial DNA B Resour. 6(4):1313–1314. doi: 10.1080/23802359.2021.1907804.
  • Uehara M, Tachihara K. 2020. Early development and occurrence patterns of the Pagrinae seabream Argyrops bleekeri (Perciformes: Sparidae): does early life history have implications for sparid relationships? J Fish Biol. 96(3):631–641. doi: 10.1111/jfb.14249.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.