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Plastome Announcement

Complete plastome of Coelastrum microporum Nägeli (Scenedesmaceae, Sphaeropleales)

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Pages 948-951 | Received 13 Dec 2022, Accepted 23 Aug 2023, Published online: 08 Sep 2023

References

  • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol. 215(3):403–410. doi:10.1016/S0022-2836(05)80360-2.
  • Bhuyar P, Sundararaju S, Rahim MHA, Maniam GP, Govindan N. 2021. Enhanced productivity of lipid extraction by urea stress conditions on marine microalgae Coelastrum sp. for improved biodiesel production. Bioresour Technol Rep. 15:100696. doi:10.1016/j.biteb.2021.100696.
  • Chan PP, Lowe TM. 2019. tRNAscan-SE: searching for tRNA Genes in Genomic Sequences. In: kollmar, M. (Ed.), Gene prediction: methods and Protocols. Springer New York, New York, NY, p. 1–14.
  • de Cambiaire JC, Otis C, Lemieux C, Turmel M. 2006. The complete chloroplast genome sequence of the chlorophycean green alga Scenedesmus obliquus reveals a compact gene organization and a biased distribution of genes on the two DNA strands. BMC Evol Biol. 6(1):37. doi:10.1186/1471-2148-6-37.
  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucl Acids Res. 45(4):e18-e18. doi:10.1093/nar/gkw955.
  • Fučíková K, Lewis PO, Lewis LA. 2016. Chloroplast phylogenomic data from the green algal order Sphaeropleales (Chlorophyceae, Chlorophyta) reveal complex patterns of sequence evolution. Mol Phylogenet Evol. 98:176–183. doi:10.1016/j.ympev.2016.01.022.
  • Goecke F, Noda J, Paliocha M, Gislerød HR. 2020. Revision of Coelastrella (Scenedesmaceae, Chlorophyta) and first register of this green coccoid microalga for continental Norway. World J Microbiol Biotechnol. 36(10):149. doi:10.1007/s11274-020-02897-0.
  • Guillard RRL. 1975. Culture of phytoplankton for feeding marine invertebrates. In: smith, W.L., Chanley, M.H. (Eds.), Culture of marine invertebrate animals. Plenum Press, New York, p. 26–60.
  • He M, Qin CX, Wang X, Ding NZ. 2020. Plant unsaturated fatty acids: biosynthesis and regulation. Front Plant Sci. 11:390. doi:10.3389/fpls.2020.00390.
  • Hegewald E, Wolf M, Keller A, Friedl T, Krienitz L. 2010. ITS2 sequence-structure phylogeny in the Scenedesmaceae with special reference to Coelastrum (Chlorophyta, Chlorophyceae), including the new genera Comasiella and Pectinodesmus. Phycologia. 49(4):325–335. doi:10.2216/09-61.1.
  • Kalyaanamoorthy S, Minh BQ, Wong TK, Von Haeseler A, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 14(6):587–589. doi:10.1038/nmeth.4285.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780. doi:10.1093/molbev/mst010.
  • Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649. doi:10.1093/bioinformatics/bts199.
  • Komárek J, Fott B. 1983. Chlorophyceae (Grünalgen) Ordnung: chlorococcales. E. Schweizerbart’sche Verlagsbuchhandlung (Nägele u. Obermiller), Stuttgart.
  • Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat Methods. 9(4):357–359. doi:10.1038/nmeth.1923.
  • Lemieux C, Otis C, Turmel M. 2014. Chloroplast phylogenomic analysis resolves deep-level relationships within the green algal class Trebouxiophyceae. BMC Evol Biol. 14(1):211. doi:10.1186/s12862-014-0211-2.
  • Lemieux C, Vincent AT, Labarre A, Otis C, Turmel M. 2015. Chloroplast phylogenomic analysis of chlorophyte green algae identifies a novel lineage sister to the Sphaeropleales (Chlorophyceae). BMC Evol Biol. 15(1):264. doi:10.1186/s12862-015-0544-5.
  • Liu Z, Hou Y, He C, Wang X, Chen S, Huang Z, Chen F. 2020. Enhancement of linoleic acid content stimulates astaxanthin esterification in Coelastrum sp. Bioresour Technol. 300:122649. doi:10.1016/j.biortech.2019.122649.
  • Maltsev Y, Krivova Z, Maltseva S, Maltseva K, Gorshkova E, Kulikovskiy M. 2021. Lipid accumulation by Coelastrella multistriata (Scenedesmaceae, Sphaeropleales) during nitrogen and phosphorus starvation. Sci Rep. 11(1):19818. doi:10.1038/s41598-021-99376-9.
  • Maul JE, Lilly JW, Cui L, DePamphilis CW, Miller W, Harris EH, Stern DB. 2002. The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats. Plant Cell. 14(11):2659–2679. doi:10.1105/tpc.006155.
  • McManus HA, Fučíková K, Lewis PO, Lewis LA, Karol KG. 2018. Organellar phylogenomics inform systematics in the green algal family Hydrodictyaceae (Chlorophyceae) and provide clues to the complex evolutionary history of plastid genomes in the green algal tree of life. Am J Bot. 105(3):315–329. doi:10.1002/ajb2.1066.
  • McManus HA, Sanchez DJ, Karol KG. 2017. Plastomes of the green algae Hydrodictyon reticulatum and Pediastrum duplex (Sphaeropleales, Chlorophyceae). PeerJ. 5:e3325. doi:10.7717/peerj.3325.
  • Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, von Haeseler A, Lanfear R. 2020. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Mol Biol Evol. 37(5):1530–1534. doi:10.1093/molbev/msaa015.
  • Theriot EC, Cannone JJ, Gutell RR, Alverson AJ. 2009. The limits of nuclear-encoded SSU rDNA for resolving the diatom phylogeny. Eur J Phycol. 44(3):277–290. doi:10.1080/09670260902749159.
  • Thomas MK, Kremer CT, Litchman E. 2016. Environment and evolutionary history determine the global biogeography of phytoplankton temperature traits. Glob Ecol Biogeogr. 25(1):75–86. doi:10.1111/geb.12387.