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Plastome Announcement

The complete chloroplast genome of Castanopsis hystrix Hook. f. & Thomson ex A. DC. 1863 (Fagaceae)

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Pages 956-959 | Received 24 May 2023, Accepted 25 Aug 2023, Published online: 08 Sep 2023

References

  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120. doi:10.1093/bioinformatics/btu170.
  • Chen X, Yang J, Yang Y, Zhang X, Du X, Zhao G. 2018. Characterization of the complete plastid genome of Castanopsis hainanensis Merrill. Conservation Genet Resour. 10(4):825–828. doi:10.1007/s12686-017-0940-9.
  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18. doi:10.1093/nar/gkw955.
  • Gao XX, Yan F, Liu M, Zulfiqar S, Zhao P. 2019. The complete chloroplast genome sequence of an endemic species Pearl chestnut (Castanea henryi). Mitochondrial DNA B Resour. 4(1):551–552. doi:10.1080/23802359.2018.1553522.
  • Huang CJ, Zhang YT, Bartholo B. 1999. Fagaceae. In: Wu ZY, Raven PH, Hong DY, editors. Flora of China Volume 4 (Fagaceae). Beijing & St. Louis: Science Press & Missouri Botanical Garden Press.
  • Huang W, Liao B, Liu H, Liang Y, Chen X, Wang B, Xia H. 2023. A chromosome-scale genome assembly of Castanopsis hystrix provides new insights into the evolution and adaptation of Fagaceae species. Front Plant Sci. 14:1174972. doi:10.3389/fpls.2023.1174972.
  • Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649. doi:10.1093/bioinformatics/bts199.
  • Liu S, Ni Y, Li J, Zhang X, Yang H, Chen H, Liu C. 2023. CPGView: A package for visualizing detailed chloroplast genome structures. Mol Ecol Resour. 23(3):694–704. doi:10.1111/1755-0998.13729.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780. doi:10.1093/molbev/mst010.
  • Liu E, Wang H, Liu SR. 2012. Characteristics of carbon storage and sequestration in different age beech (Castanopsis hystrix) plantations in south subtropical area of China. Ying Yong Sheng Tai Xue Bao. 23:335–340.
  • Palmer JD. 1985. Comparative Organization of Chloroplast Genomes. Annu Rev Genet. 19(1):325–354. doi:10.1146/annurev.ge.19.120185.001545.
  • Park J, Xi H, Son J, Shin HT, Kang H, Park S. 2021. The complete chloroplast genome of Castanopsis sieboldii (Makino) Hatus (Fagaceae). Mitochondrial DNA B Resour. 6(9):2743–2745. doi:10.1080/23802359.2021.1966339.
  • Peng J, Yang L, Duan A, Wang D, Li S. 2021. The complete chloroplast genome of Castanopsis mekongensis A. Camus (Fagaceae). Mitochondrial DNA B Resour. 6(1):168–170. doi:10.1080/23802359.2020.1860707.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30(9):1312–1313. doi:10.1093/bioinformatics/btu033.
  • Sun RX, Ye XM, Wang ZL, Lin XF. 2019. The complete chloroplast genome of Castanopsis carlesii (Hemsl.) Hay. Mitochondrial DNA B Resour. 4(2):2591–2592. doi:10.1080/23802359.2019.1641437.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq – versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–W11. doi:10.1093/nar/gkx391.
  • Wang YF, Huang YL, He RJ, Yang BY, Liu ZB. 2023. The complete chloroplast genome sequence of Castanopsis fordii Hance (Fagaceae). Mitochondrial DNA B Resour. 8(2):236–239. doi:10.1080/23802359.2023.2167477.
  • Yang Y, Zhang H, Ren T, Zhao G. 2018. Characterization of the complete plastid genome of Quercus tungmaiensis. Conservation Genet Resour. 10(3):457–460. doi:10.1007/s12686-017-0848-4.
  • Yang Y, Zhu J, Feng L, Zhou T, Bai G, Yang J, Zhao G. 2018. Plastid genome comparative and phylogenetic analyses of the key genera in Fagaceae: highlighting the effect of codon composition bias in phylogenetic inference. Front Plant Sci. 9:82. doi:10.3389/fpls.2018.00082.
  • Ye X, Guo Y, Lei X, Sun R. 2019. The complete chloroplast genome of Castanopsis fargesii Franch. (Fagaceae), Mitochondrial DNA B Resour. 4(1):1656–1657. doi:10.1080/23802359.2019.1605850.
  • Ye X, Hu D, Guo Y, Sun R. 2019. Complete chloroplast genome of Castanopsis sclerophylla (Lindl.) Schott: genome structure and comparative and phylogenetic analysis. PLoS One. 14(7):e0212325. doi:10.1371/journal.pone.0212325.
  • Zhou C. 2007. Research Overview and Biological Characteristics of Precious Timber Tree Species-Castanopsis hystrix. Jiangxi Forestry Sci Technol. 5:29–31.