Phylogenetic relationship and characterization of the complete chloroplast genome of Rhododendron przewalskii subsp. przewalskii Maximowicz 1877, an ornamental and medicinal plant in China

References

• An R, Niu MY, Lou XZ, Huang HL, Lin E. 2022. The complete chloroplast genome of Rhododendron huadingense (Ericaceae). Mitochondrial DNA B Resour. 7(11):1910–1912. doi: 10.1080/23802359.2022.2135403.
   PubMed Web of Science ®Google Scholar
• Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120. doi: 10.1093/bioinformatics/btu170.
   PubMed Web of Science ®Google Scholar
• Dai L, He J, Miao X, Guo X, Shang X, Wang W, Li B, Wang Y, Pan H, Zhang J. 2021. Multiple biological activities of Rhododendron przewalskii Maxim. extracts and UPLC-ESI-Q-TOF/MS characterization of their phytochemical composition. Front Pharmacol. 12:599778. doi: 10.3389/fphar.2021.599778.
   PubMed Web of Science ®Google Scholar
• Fernando MA, Del Campo EM, Lázaro-Gimeno D, Mezquita-Claramonte S, Molins A, Mateu-Andrés I, Pedrola-Monfort J, Casano LM, Barreno E. 2013. Balanced gene losses, duplications, and intensive rearrangements led to an unusual regularly sized genome in Arbutus unedo chloroplasts. PLOS One. 8(11):e79685. doi: 10.1371/journal.pone.0079685.
   PubMed Web of Science ®Google Scholar
• Hong S, Cheon K, Yoo K, Lee H, Mekapogu M, Cho K. 2019. Comparative analysis of the complete chloroplast genome sequences of three Amaranthus species. Plant Genet Resour. 17(3):245–254. doi: 10.1017/S1479262118000485.
   Web of Science ®Google Scholar
• Huong NT, Hiep NT. 2012. Agapetes malipoensis S. H. Huang (Ericaceae juss.), a new species for the flora of Vietnam. V J Bio. 32(1):e649. doi: 10.15625/0866-7160/v32n1.649.
   Google Scholar
• Kearse M, Moir R, Wilson A, Steven SH, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649. doi: 10.1093/bioinformatics/bts199.
   PubMed Web of Science ®Google Scholar
• Kim BY, Kwon EB, Yang HJ, Li W, Hwang YH, Kim YS, Pak ME, Go YH, Choi JG. 2022. Vaccinium bracteatum Thunb extract inhibits HSV-1 infection by regulating ER stress and apoptosis. Antioxidants. 11(9):1773. doi: 10.3390/antiox11091773.
   Web of Science ®Google Scholar
• Kim SC, Baek SH, Lee JW, Hyun HJ. 2019. Complete chloroplast genome of Vaccinium oldhamii and phylogenetic analysis. Mitochondrial DNA Part B. 4(1):902–903. doi: 10.1080/23802359.2019.1579067.
   Web of Science ®Google Scholar
• Kozlov AM, Darriba D, Flouri T, Morel B, Stamatakis A. 2019. RAxML-NG: a fast, scalable, and user-friendly tool for maximum likelihood phylogenetic inference. Bioinformatics. 35(21):4453–4455. doi: 10.1093/bioinformatics/btz305.
   PubMed Web of Science ®Google Scholar
• Li YR, Xu YL, Du XY, Yang SD, Lu L. 2021. Characterization of the complete plastid genome of Gaultheria griffithiana (Ericaceae). Mitochondrial DNA B Resour. 6(5):1575–1577. doi: 10.1080/23802359.2021.1914227.
   PubMed Web of Science ®Google Scholar
• Liu DT, Fu CN, Yin LJ, Ma YP. 2020. Complete plastid genome of Rhododendron griersonianum, a critically endangered plant with extremely small populations (PSESP) from southwest China. Mitochondrial DNA B Resour. 5(3):3086–3087. doi: 10.1080/23802359.2020.1800427.
   PubMed Web of Science ®Google Scholar
• Liu J, Chen T, Zhang YB, Li YK, Gong JY, Yi Y. 2020. The complete chloroplast genome of Rhododendron delavayi (Ericaceae). Mitochondrial DNA B Resour. 5(1):37–38. doi: 10.1080/23802359.2019.1689860.
   Web of Science ®Google Scholar
• Liu N, Lu Z, Zhou YL, Tu ML, Wu ZZ, Gui DP, Ma YP, Wang JH, Zhang CJ. 2021. The Rhododendron plant genome database (RPGD): a comprehensive online omics database for Rhododendron. BMC Genomics. 22(1):376. doi: 10.1186/s12864-021-07704-0.
   PubMed Web of Science ®Google Scholar
• Luo DS. 2018. The original interpretation of Jingzhu Materia Medica. Chengdu: Sichuan Science and Technology Press; p. 485.
   Google Scholar
• Ma WB, Yu T, Wang WJ, Wang F, Ji HJ, Mu CL. 2022. The complete chloroplast genome of Rhododendron calophytum Franch (Ericaceae). Mitochondrial DNA Part B. 7(9):1758–1759. doi: 10.1080/23802359.2022.2106161.
   Web of Science ®Google Scholar
• Ma YP, Xie WJ, Sun WB, Marczewski T. 2016. Strong reproductive isolation despite occasional hybridization between a widely distributed and a narrow endemic Rhododendron species. Sci Rep. 6(1):1–11.
   PubMedGoogle Scholar
• Si H, Li R, Zhang QD, Liu LX. 2022. Complete chloroplast genome of Plantago asiatica and its phylogenetic position in Plantaginaceae. Mitochondrial DNA B Resour. 7(5):819–821. doi: 10.1080/23802359.2022.2073838.
   PubMed Web of Science ®Google Scholar
• Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30(9):1312–1313. doi: 10.1093/bioinformatics/btu033.
   PubMed Web of Science ®Google Scholar
• Tang CY, Li XZ, Chen JB, Liang J, Wang T, Yuling L. 2022. Characterization and phylogenetic relationship of the complete chloroplast genome of a Chinese traditional medicinal plant Potentilla anserina. Mitochondrial DNA B Resour. 7(9):1653–1655. doi: 10.1080/23802359.2022.2119817.
   PubMed Web of Science ®Google Scholar
• Xu YL, Du X-Y, Yi-Rong L, Lu L. 2021. The complete chloroplast genome of Gaultheria fragrantissima Wall. (Ericaceae) from Yunnan, China, an aromatic medicinal plant in the winter greens. Mitochondrial DNA B Resour. 6(6):1761–1762. doi: 10.1080/23802359.2021.1923425.
   PubMed Web of Science ®Google Scholar
• Zhang J, Cheng XJ, Fritsch Peter W, Li Y, Yang SD, Lu L. 2022. Genetic variation in Gaultheria nummularioides (Ericaceae: Gaultherieae) from the Sky Islands of the Himalaya-Hengduan Mountains. Plant Diversity. 14(8):e652. doi: 10.3390/d14080652.
   Google Scholar
• Zhang YM, Han LJ, Yang CW, Yin ZL, Tian Y, Qian ZG, Li DG. 2022. Comparative chloroplast genome analysis of medicinally important Veratrum (Melanthiaceae) in China: insights into genomic characterization and phylogenetic relationships. Plant Divers. 44(1):70–82. doi: 10.1016/j.pld.2021.05.004.
   PubMed Web of Science ®Google Scholar
• Zhou XJ, Wei MJ, Zhang K, Han JW, Wang HL, Dong SW. 2021. Characterization of the complete chloroplast genome of Rhododendron henanense subsp. lingbaoense Fang. Mitochondrial DNA B Resour. 6(12):3325–3326. doi: 10.1080/23802359.2021.1994898.
   PubMed Web of Science ®Google Scholar
• Zhuang P. 2019. Progress on the fertility of Rhododendron. Biodivers Sci. 27(3):327–338.
   Google Scholar