Characterization of the complete mitochondrial genome and phylogenetic analysis of bean thrips Megalurothrips usitatus (Bagnall, 1913) (Thysanoptera: thripidae)

References

• Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319. doi: 10.1016/j.ympev.2012.08.023.
   PubMed Web of Science ®Google Scholar
• Boore J-L. 2001. Complete mitochondrial genome sequence of the polychaete annelid Platynereis dumerilii. Mol Biol Evol. 18(7):1413–1416. doi: 10.1093/oxfordjournals.molbev.a003925.
   PubMed Web of Science ®Google Scholar
• Chakraborty R, Tyagi K, Kundu S, Rahaman I, Singha D, Chandra K, Patnaik S, Kumar V. 2018. The complete mitochondrial genome of Melon thrips, Thrips palmi (Thripinae): comparative analysis. PLoS One. 13(10):e0199404. doi: 10.1371/journal.pone.0199404.
   PubMed Web of Science ®Google Scholar
• Darriba D, Posada D, Kozlov AM, Stamatakis A, Morel B, Flouri T. 2020. ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models. Mol Biol Evol. 37(1):291–294. doi: 10.1093/molbev/msz189.
   PubMed Web of Science ®Google Scholar
• Hu Q-L, Ye Z-X, Zhang C-X. 2023. High-throughput sequencing yields a complete mitochondrial genome of the rice thrips, Stenchaetothrips biformis (Thysanoptera: thripidae). Mitochondrial DNA B Resour. 8(2):204–206. doi: 10.1080/23802359.2023.2169572.
   PubMed Web of Science ®Google Scholar
• Huang W-K, Kong X-Y, Ke Y-C, Wang S, Li Q-J, Fu Q-W, Wu Q-X, Liu Y. 2018. Research progress on Thrips Megalurothrips usitatus. China Vegetables. 348(2):21–27.doi: 10.19928/j.cnki.1000-6346.2018.02.005.
   Google Scholar
• Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A. 2012. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649. doi: 10.1093/bioinformatics/bts199.
   PubMed Web of Science ®Google Scholar
• Letunic I & Bork P. 2007. Interactive tree of life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics. 23(1):127–128. doi: 10.1093/bioinformatics/btl529.
   PubMed Web of Science ®Google Scholar
• Liu H-R, Li H, Song F, Gu W-Y, Feng J-N, Cai W-Z, Shao R-F. 2017. Novel insights into mitochondrial gene rearrangement in thrips (Insecta: thysanoptera) from the grass thrips Anaphothrips obscurus. Sci Rep. 7(1):4284. doi: 10.1038/s41598-017-04617-5.
   PubMedGoogle Scholar
• Liu P-P, Qin Z-F, Feng M-Y, Zhang L, Huang X-Z, Shi W-P. 2020. The male-produced aggregation pheromone of the bean flower thrips Megalurothrips usitatus in China: identification and attraction of conspecifics in the laboratory and field. Pest Manag Sci. 76(9):2986–2993. doi: 10.1002/ps.5844.
   PubMed Web of Science ®Google Scholar
• Mound LA, Kibby G. 1998. Thysanoptera: An identification guide. Oxford and New York: Ed. CABI p. 70.
   Google Scholar
• Nguyen L-T, Schmidt H-A, Von Haeseler A, Minh B-Q. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. doi: 10.1093/molbev/msu300.
   Google Scholar
• Palmer J-M. 1987. Megalurothrips in the flowers of tropical legumes: a morphometric study. In Holman J, Pelikan J, Dixon AFG & Weismann L. [eds] Population structure, genetics and taxonomy of aphids and Thysanoptera. The Hague (SPB Academic Publishing): p. 480–495.
   Google Scholar
• Qiu H-Y, Liu K, Li P, Fu B-L, Tang L, Zhang M. 2014. Biological characteristics of the bean flower thrips, Megalurothrips usitatus (Thysanoptera: thripidae). Chinese J Trop Crops. 35(12):2437–2441.
   Google Scholar
• Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61(3):539–542. doi: 10.1093/sysbio/sys029.
   PubMed Web of Science ®Google Scholar
• Shao R, Barker SC. 2003. The highly rearranged mitochondrial genome of the plague thrips Thrips imaginis (Insecta: thysanoptera): convergence of two novel gene boundaries and an extraordinary arrangement of rRNA genes. Mol Biol Evol. 20(3):362–370. doi: 10.1093/molbev/msg045.
   PubMed Web of Science ®Google Scholar
• Tang L-D, Yan K-L, Fu B-L, Wu J-H, Liu K, Lu Y-Y. 2015. The life table parameters of Megalurothrips usitatus (Thysanoptera: thripidae) on four leguminous crops. Fla Entomol. 98(2):620–625. doi: 10.1653/024.098.0235.
   Web of Science ®Google Scholar
• Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones E-S, Fischer A, Bock R, Greiner S. 2017. GeSeq–versatile and accurate annotation of organelle genomes. Nucleic acids research. 45(1): 6–11. doi: 10.1093/nar/gkx391.
   Google Scholar
• Tyagi K, Chakraborty R, Cameron SL, Sweet AD, Chandra K, Kumar V. 2020. Rearrangement and evolution of mitochondrial genomes in Thysanoptera (Insecta). Sci Rep. 10(1):695. doi: 10.1038/s41598-020-57705-4.
   PubMed Web of Science ®Google Scholar
• Yan D-K, Tang Y-X, Hu M, Liu F-Q, Zhang D-F, Fan J-Q. 2014. The mitochondrial genome of Frankliniella intonsa: insights into the evolution of mitochondrial genomes at lower taxonomic levels in Thysanoptera. Genomics. 104(4):306–312. doi: 10.1016/j.ygeno.2014.08.003.
   PubMed Web of Science ®Google Scholar
• Yan D-K, Tang Y-X, Xue X-F, Wang M-H, Liu F-Q, Fan J-Q. 2012. The complete mitochondrial genome sequence of the western flower thrips Frankliniella occidentalis (Thysanoptera: thripidae) contains triplicate putative control regions. Gene. 506(1):117–124. doi: 10.1016/j.gene.2012.06.022.
   Google Scholar