574
Views
0
CrossRef citations to date
0
Altmetric
Plastome Announcement

The complete chloroplast genome of a halophyte glasswort Salicornia europaea

, , , , &
Pages 1165-1168 | Received 23 Jul 2023, Accepted 20 Oct 2023, Published online: 30 Oct 2023

References

  • Berthomieu P, Conéjéro G, Nublat A, Brackenbury WJ, Lambert C, Savio C, Uozumi N, Oiki S, Yamada K, Cellier F, et al. 2003. Functional analysis of AtHKT1 in Arabidopsis shows that Na+ recirculation by the phloem is crucial for salt tolerance. EMBO J. 22(9):2004–2014. doi: 10.1093/emboj/cdg207.
  • Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T. 2009. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics. 25(15):1972–1973. doi: 10.1093/bioinformatics/btp348.
  • Cárdenas-Pérez S, Piernik A, Chanona-Pérez JJ, Grigore MN, Perea-Flores MJ. 2021. An overview of the emerging trends of the Salicornia L. genus as a sustainable crop. Environ Exp Bot. 191:104606. doi: 10.1016/j.envexpbot.2021.104606.
  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18. doi: 10.1093/nar/gkw955.
  • Duan H, Tiika RJ, Tian F, Lu Y, Zhang Q, Hu Y, Cui G, Yang H. 2022. Metabolomics analysis unveils important changes involved in the salt tolerance of Salicornia europaea. Front Plant Sci. 13:1097076. doi: 10.3389/fpls.2022.1097076.
  • Duan H-R, Ma Q, Zhang J-L, Hu J, Bao A-K, Wei L, Wang Q, Luan S, Wang S-M. 2015. The inward-rectifying K+ channel SsAKT1 is a candidate involved in K+ uptake in the halophyte Suaeda salsa under saline condition. Plant Soil. 395(1–2):173–187. doi: 10.1007/s11104-015-2539-9.
  • Harada T, Torii Y, Morita S, Onodera R, Hara Y, Yokoyama R, Nishitani K, Satoh S. 2011. Cloning, characterization, and expression of xyloglucan endotransglucosylase/hydrolase and expansin genes associated with petal growth and development during carnation flower opening. J Exp Bot. 62(2):815–823. doi: 10.1093/jxb/erq319.
  • Jamdade R, Al-Shaer K, Al-Sallani M, Al-Harthi E, Mahmoud T, Gairola S, Shabana HA. 2022. Multilocus marker-based delimitation of Salicornia persica and its population discrimination assisted by supervised machine learning approach. PLOS One. 17(7):e0270463. doi: 10.1371/journal.pone.0270463.
  • Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30(14):3059–3066. doi: 10.1093/nar/gkf436.
  • Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat Methods. 9(4):357–359. doi: 10.1038/nmeth.1923.
  • Linnaeus C. 1753. Species Plantarum. Sweden: Arkose Press.
  • Liu S, Ni Y, Li J, Zhang X, Yang H, Chen H, Liu C. 2023. CPGView: a package for visualizing detailed chloroplast genome structures. Mol Ecol Resour. 23(3):694–704. doi: 10.1111/1755-0998.13729.
  • Nikalje GC, Srivastava AK, Pandey GK, Suprasanna P. 2018. Halophytes in biosaline agriculture: mechanism, utilization, and value addition. Land Degrad Dev. 29(4):1081–1095. doi: 10.1002/ldr.2819.
  • Ozawa T, Miura M, Fukuda M, Kakuta S. 2009. Cadmium tolerance and accumulation in a halophyte Salicornia europaea as a new candidate for phytoremediation of saline soils. Sci Rep Grad Sch Life Environ Sci. 60:1–8.
  • Rezaei Qusheh Bolagh F, Solouki A, Tohidfar M, Zare Mehrjerdi M, Izadi-Darbandi A, Vahdati K. 2021. Agrobacterium-mediated transformation of Persian walnut using BADH gene for salt and drought tolerance. J Hortic Sci Biotechnol. 96(2):162–171. doi: 10.1080/14620316.2020.1812446.
  • Shabala S, Cuin TA. 2008. Potassium transport and plant salt tolerance. Physiol Plant. 133(4):651–669. doi: 10.1111/j.1399-3054.2007.01008.x.
  • Shi X, Han H, Shi W, Li Y. 2006. NaCl and TDZ are two key factors for the improvement of in vitro regeneration rate of Salicornia europaea L. J Integr Plant Biol. 48(10):1185–1189. doi: 10.1111/j.1744-7909.2006.00342.x.
  • Voronin PY, Ivanova LA, Ronzhina DA, Myasoedov NA, Balnokin YV. 2019. Morphometric characterization of halophytic plant chloroplasts. Russ J Plant Physiol. 66(5):707–711. doi: 10.1134/S1021443719050200.
  • Zhang H, Feng H, Zhang J, Ge R, Zhang L, Wang Y, Li L, Wei J, Li R. 2020. Emerging crosstalk between two signaling pathways coordinates K+ and Na+ homeostasis in the halophyte Hordeum brevisubulatum. J Exp Bot. 71(14):4345–4358. doi: 10.1093/jxb/eraa191.