368
Views
0
CrossRef citations to date
0
Altmetric
Plastome Announcement

The complete chloroplast genome of Fargesia angustissima T. P. Yi: a panda dietary bamboo species

, , , & ORCID Icon
Pages 1183-1186 | Received 13 Jun 2023, Accepted 21 Oct 2023, Published online: 01 Nov 2023

References

  • Burke SV, Clark LG, Triplett JK, Grennan CP, Duvall MR. 2014. Biogeography and phylogenomics of New World Bambusoideae (Poaceae), revisited. Am J Bot. 101(5):886–891. doi: 10.3732/ajb.1400063.
  • Guo Z-H, Li D-Z. 2004. Phylogenetics of the Thamnocalamus group and its allies (Gramineae: Bambusoideae): inference from the sequences of GBSSI gene and ITS spacer. Mol Phylogenet Evol. 30(1):1–12. doi: 10.1016/s1055-7903(03)00161-1.
  • Jin J-J, Yu W-B, Yang J-B, Song Y, dePamphilis CW, Yi T-S, Li D-Z. 2020. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21(1):241. doi: 10.1186/s13059-020-02154-5.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780. doi: 10.1093/molbev/mst010.
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35(6):1547–1549. doi: 10.1093/molbev/msy096.
  • Li G, Song H, Altigani LAA, Zheng X, Bu S. 2017. Changes of foraging patch selection and utilization by a giant panda after bamboo flowering. Environ Sci Pollut Res Int. 24(19):16418–16428. doi: 10.1007/s11356-017-9164-5.
  • Liu S, Ni Y, Li J, Zhang X, Yang H, Chen H, Liu C. 2023. CPGView: a package for visualizing detailed chloroplast genome structures. Mol Ecol Resour. 23(3):694–704. doi: 10.1111/1755-0998.13729.
  • Liu C, Shi L, Zhu Y, Chen H, Zhang J, Lin X, Guan X. 2012. CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences. BMC Genomics. 13:715. doi: 10.1186/1471-2164-13-715.
  • Ma P-F, Zhang Y-X, Zeng C-X, Guo Z-H, Li D-Z. 2014. Chloroplast phylogenomic analyses resolve deep-level relationships of an intractable bamboo tribe Arundinarieae (poaceae). Syst Biol. 63(6):933–950. doi: 10.1093/sysbio/syu054.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq – versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–W11. doi: 10.1093/nar/gkx391.
  • Williams AV, Miller JT, Small I, Nevill PG, Boykin LM. 2016. Integration of complete chloroplast genome sequences with small amplicon datasets improves phylogenetic resolution in Acacia. Mol Phylogenet Evol. 96:1–8. doi: 10.1016/j.ympev.2015.11.021.
  • Wu M, et al. 2015. The complete chloroplast genome of Guadua angustifolia and comparative analyses of neotropical-paleotropical bamboos. PloS One. 10:e0143792. doi: 10.1371/journal.pone.0143792.
  • Wu Z-Q, Ge S. 2012. The phylogeny of the BEP clade in grasses revisited: evidence from the whole-genome sequences of chloroplasts. Mol Phylogenet Evol. 62(1):573–578. doi: 10.1016/j.ympev.2011.10.019.
  • Ye X-Y, Zhang Y-X, Li D-Z. 2021. Two new species of Yushania (Poaceae: bambusoideae) from South China, with a taxonomic revision of related species. Plant Divers. 43(6):492–501. doi: 10.1016/j.pld.2021.03.001.
  • Zhang Y-J, Ma P-F, Li D-Z. 2011. High-throughput sequencing of six bamboo chloroplast genomes: phylogenetic implications for temperate woody bamboos (Poaceae: Bambusoideae). PloS One. 6(5):e20596. doi: 10.1371/journal.pone.0020596.
  • Zhou Y, Zhang Y-Q, Xing X-C, Zhang J-Q, Ren Y. 2019. Straight from the plastome: molecular phylogeny and morphological evolution of Fargesia (Bambusoideae: Poaceae). Front Plant Sci. 10:981. doi: 10.3389/fpls.2019.00981.