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Mitogenome Announcement

The complete mitochondrial genome of Goniurosaurus varius (Squamata: Eublepharidae)

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Pages 1215-1219 | Received 18 Aug 2023, Accepted 29 Oct 2023, Published online: 09 Nov 2023

References

  • Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319. doi: 10.1016/j.ympev.2012.08.023.
  • Boore J. 1999. Animal mitochondrial genomes. Nucleic Acids Res. 27(8):1767–1780. doi: 10.1093/nar/27.8.1767.
  • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 17(4):540–552. doi: 10.1093/oxfordjournals.molbev.a026334.
  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18. doi: 10.1093/nar/gkw955.
  • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32(5):1792–1797. doi: 10.1093/nar/gkh340.
  • Grismer LL, Ngo HN, Qi S, Wang Y-Y, Le MD, Ziegler T. 2021. Phylogeny and evolution of habitat preference in Goniurosaurus (Squamata: Eublepharidae) and their correlation with karst and granite-stream-adapted ecomorphologies in species groups from Vietnam. Vertebr Zool. 71:335–352. doi: 10.3897/vz.71.e65969.
  • Hao S, Ping J, Zhang Y. 2016. Complete mitochondrial genome of Gekko chinensis (Squamata, Gekkonidae). Mitochondrial DNA A DNA Mapp Seq Anal. 27(6):4226–4227. doi: 10.3109/19401736.2015.1022751.
  • Holmes IA, Mautz WJ, Davis Rabosky AR. 2016. Historical environment is reflected in modern population genetics and biogeography of an island endemic lizard (Xantusia riversiana reticulata). PLoS One. 11(11):e0163738. doi: 10.1371/journal.pone.0163738.
  • Holmes IA, Monagan IV, Jr Westphal MF, Johnson PJ, Davis Rabosky AR. 2023. Parsing variance by marker type: testing biogeographic hypotheses and differential contribution of historical processes to population structure in a desert lizard. Mol Ecol. 32(17):4880–4897. doi: 10.1111/mec.17076.
  • Jonniaux P, Hashiguchi Y, Kumazawa Y. 2012. Mitochondrial genomes of two African geckos of genus Hemitheconyx (Squamata: Eublepharidae). Mitochondrial DNA. 23(4):278–279. doi: 10.3109/19401736.2012.668898.
  • Jonniaux P, Kumazawa Y. 2008. Molecular phylogenetic and dating analyses using mitochondrial DNA sequences of eyelid geckos (Squamata: Eublepharidae). Gene. 407(1–2):105–115. doi: 10.1016/j.gene.2007.09.023.
  • Kilpert F, Held C, Podsiadlowski L. 2012. Multiple rearrangements in mitochondrial genomes of Isopoda and phylogenetic implications. Mol Phylogenet Evol. 64(1):106–117. doi: 10.1016/j.ympev.2012.03.013.
  • Kurabayashi A, Sumida M. 2013. Afrobatrachian mitochondrial genomes: genome reorganization, gene rearrangement mechanisms, and evolutionary trends of duplicated and rearranged genes. BMC Genomics. 14(1):633. doi: 10.1186/1471-2164-14-633.
  • Lanfear R, Calcott B, Ho SY, Guindon S. 2012. Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol Biol Evol. 29(6):1695–1701. doi: 10.1093/molbev/mss020.
  • Li HM, Hou LX, Zhang Y, Guo DN, Liu YJ, Qin XM. 2016. Complete mitochondrial genome of Goniurosaurus luii (Squamata, Eublepharidae). Mitochondrial DNA A DNA Mapp Seq Anal. 27(3):2131–2132. doi: 10.3109/19401736.2014.982591.
  • Lisachov A, Tishakova K, Romanenko S, Lisachova L, Davletshina G, Prokopov D, Kratochvíl L, Brien O, Ferguson-Smith P, Borodin M, et al. 2023. Robertsonian fusion triggers recombination suppression on sex chromosomes in Coleonyx geckos. Sci Rep. 13(1):15502. doi: 10.1038/s41598-023-39937-2.
  • Ma JL, Dai XY, Xu XD, Guan JY, Zhang YP, Zhang JY, Yu DN. 2020. The complete mitochondrial genome of Teratoscincus roborowskii (Squamata: gekkonidae) and its phylogeny. Mitochondrial DNA Part B. 5(2):1575–1577. doi: 10.1080/23802359.2020.1742608.
  • Ni Y, Li J, Zhang C, Liu C. 2023. Generating sequencing depth and coverage map for organelle genomes. doi: 10.17504/protocols.io.4r3l27jkxg1y/v1.
  • Pinto BJ, Gamble T, Smith CH, Keating SE, Havird JC, Chiari Y. 2023. The revised reference genome of the leopard gecko (Eublepharis macularius) provides insight into the considerations of genome phasing and assembly. J Hered. 114(5):513–520. doi: 10.1093/jhered/esad016.
  • Qi S, Grismer LL, Lyu ZT, Zhang L, Li PP, Wang YY. 2020. A definition of the Goniurosaurus yingdeensis group (Squamata, Eublepharidae) with the description of a new species. Zookeys. 986:127–155. doi: 10.3897/zookeys.986.47989.
  • Ryberg WA, Hill MT, Painter CW, Fitzgerald LA. 2013. Landscape pattern determines neighborhood size and structure within a lizard population. PLoS One. 8(2):e56856. doi: 10.1371/journal.pone.0056856.
  • Sano N, Kurabayashi A, Fujii T, Yonekawa H, Sumida M. 2005. Complete nucleotide sequence of the mitochondrial genome of Schlegel’s tree frog Rhacophorus schlegelii (family Rhacophoridae): duplicated control regions and gene rearrangements. Genes Genet Syst. 80(3):213–224. doi: 10.1266/ggs.80.213.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30(9):1312–1313. doi: 10.1093/bioinformatics/btu033.
  • Uetz P, Freed P, Aguilar R, Reyes F, Hošek J. 2023. The reptile database. [accessed 2023 Oct 10]. www.reptile-database.org.
  • Zheng S, Poczai P, Hyvönen J, Tang J, Amiryousefi A. 2020. Chloroplot: an online program for the versatile plotting of organelle genomes. Front Genet. 11:576124. doi: 10.3389/fgene.2020.576124.