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Mitogenome Announcement

Complete mitochondrial genome of Mastigias papua (Scyphozoa: Rhizostomeae: Mastigiidae) based on next-generation sequencing and phylogenetic analysis

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Pages 1294-1297 | Received 03 Aug 2023, Accepted 02 Nov 2023, Published online: 27 Nov 2023

References

  • Bayha KM, Graham WM. 2011. First confirmed reports of the rhizostome jellyfish Mastigias (Cnidaria: Rhizostomeae) in the Atlantic basin. Aquat Invas. 6(3):361–366. doi: 10.3391/ai.2011.6.3.13.
  • Bayha KM, Graham WM. 2014. Nonindigenous marine jellyfish: invasiveness, invasibility, and impacts. In: Pitt KA, Lucas CH, editors. Jellyfish blooms. Berlin: Springer; p. 45–77.
  • Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319. doi: 10.1016/j.ympev.2012.08.023.
  • Birsa LM, Verity PG, Lee RF. 2010. Evaluation of the effects of various chemicals on discharge of and pain caused by jellyfish nematocysts. Comp Biochem Physiol C Toxicol Pharmacol. 151(4):426–430. doi: 10.1016/j.cbpc.2010.01.007.
  • Chan PP, Lowe TM. 2019. tRNAscan-SE: searching for tRNA genes in genomic sequences. Methods Mol Biol. 1962:1–14. doi: 10.1007/978-1-4939-9173-0_1.
  • Condon RH, Steinberg DK, Del Giorgio PA, Bouvier TC, Bronk DA, Graham WM, Ducklow HW. 2011. Jellyfish blooms result in a major microbial respiratory sink of carbon in marine systems. Proc Natl Acad Sci U S A. 108(25):10225–10230. doi: 10.1073/pnas.1015782108.
  • Dawson MN, Hamner WM. 2003. Geographic variation and behavioral evolution in marine plankton: the case of Mastigias (Scyphozoa: Rhizostomeae). Mar Biol. 143(6):1161–1174. doi: 10.1007/s00227-003-1155-z.
  • Dawson MN, Hamner WM. 2009. A character-based analysis of the evolution of jellyfish blooms: adaptation and exaptation. Hydrobiologia. 616(1):193–215. doi: 10.1007/s10750-008-9591-x.
  • Dawson MN. 2004. Some implications of molecular phylogenetics for understanding biodiversity in jellyfishes, with emphasis on Scyphozoa. Hydrobiologia. 530–531(1–3):249–260. doi: 10.1007/s10750-004-2659-3.
  • Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/nt. Nucleic Acids Symposium Series. 41:95–98.
  • Jouiaei M, Yanagihara AA, Madio B, Nevalainen TJ, Alewood PF, Fry BG. 2015. Ancient venom systems: a review on Cnidaria toxins. Toxins. 7(6):2251–2271. doi: 10.3390/toxins7062251.
  • Karagozlu MZ, Ki J-S, Seo Y, Kim CB. 2018. The complete mitogenome of ghost jellyfish Cyanea nozakii (Cnidaria, Semaeostomeae, Cyaneidae). Mitochondrial DNA B Resour. 3(1):81–82. doi: 10.1080/23802359.2017.1422408.
  • Karagozlu MZ, Seo Y, Ki J-S, Kim C-B. 2019. The complete mitogenome of brownbranded moon jellyfish Aurelia limbata (Cnidaria, Semaeostomeae, Ulmaridae) with phylogenetic analysis. Mitochondrial DNA Part B. 4(1):1875–1876. doi: 10.1080/23802359.2019.1614494.
  • Kayal E, Bentlage B, Collins AG, Kayal M, Pirro S, Lavrov DV. 2012. Evolution of linear mitochondrial genomes in medusozoan cnidarians. Genome Biol Evol. 4(1):1–12. doi: 10.1093/gbe/evr123.
  • Keith MB, Michael ND, Allen GC, Marcos SB, Steven HD. 2010. Evolutionary relationships among scyphozoan jellyfish families based on complete taxon sampling and phylogenetic analyses of 18S and 28S ribosomal DNA. Integr Comp Biol. 50(3):436–455.
  • Krapm PL. 1961. Synopsis of the medusae of the world. J Mar Biol Assoc UK. 40:1–469.
  • Kumar S, Stecher G, Tamura K. 2016. Mega7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 33(7):1870–1874. doi: 10.1093/molbev/msw054.
  • Lesson RP. 1830. Voyage autour du monde, exécut par ordre du Roi, sur la corvette de Sa Magest La Coquille, pendant lesannées. Paris: Arthus Bertrand.
  • Lin J, Feng S, Wang L, Qiu Y. 2022. Complete mitochondrial genome sequence of Acromitus flagellatus and its phylogenetic relationship with related jellyfish species. Mitochondrial DNA B Resour. 7(10):1823–1824. doi: 10.1080/23802359.2022.2131367.
  • Meng G, Li Y, Yang C, Liu S. 2019. MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization. Nucleic Acids Res. 47(11):e63. doi: 10.1093/nar/gkz173.
  • Meredith RW, Gaynor JJ, Bologna PA. 2016. Diet assessment of the Atlantic Sea Nettle Chrysaora quinquecirrha in Barnegat Bay, New Jersey, using next-generation sequencing. Mol Ecol. 25(24):6248–6266. doi: 10.1111/mec.13918.
  • Park E, Hwang DS, Lee JS, Song JI, Seo TK, Won YJ. 2012. Estimation of divergence times in cnidarian evolution based on mitochondrial protein-coding genes and the fossil record. Mol Phylogenet Evol. 62(1):329–345. doi: 10.1016/j.ympev.2011.10.008.
  • Poliseno A, Santos ME, Kise H, Macdonald B, Quattrini AM, McFadden CS, Reimer J. 2020. Evolutionary implications of analyses of complete mitochondrial genomes across order Zoantharia (Cnidaria: Hexacorallia). J Zool Syst Evol Res. 58(4):858–868. doi: 10.1111/jzs.12380.
  • Schoch CL, Ciufo S, Domrachev M, Hotton CL, Kannan S, Khovanskaya R, Leipe D, Mcveigh R, O'Neill K, Robbertse B, et al. 2020. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database. 2020:baaa062. doi: 10.1093/database/baaa062.
  • Shao Z, Graf S, Chaga OY, Lavrov DV. 2006. Mitochondrial genome of the moon jelly Aurelia aurita (Cnidaria, Scyphozoa): a linear DNA molecule encoding a putative DNA-dependent DNA polymerase. Gene. 381:92–101. doi: 10.1016/j.gene.2006.06.021.
  • Souza M, Dawson MN. 2018. Redescription of Mastigias papua (Scyphozoa, Rhizostomeae) with designation of a neotype and recognition of two additional species. Zootaxa. 4457(4):520–536. doi: 10.11646/zootaxa.4457.4.2.
  • Stampar SN, Maronna MM, Antunes M Jr, Oliveira UCD, Morandini AC. 2013. Mitochondrial genome of Chrysaora lactea (Cnidaria: Scyphozoa): an assessment of the genetic distance based on all mitochondrial markers. In: Shin-ichi U, Richard B, editors. Fourth Jellyfish Bloom Symposium, June 5–7, Hiroshima, Japan; North Pacific Marine Science Organization (PICES), Canada.
  • Stiasny G. 1921. Studien über Rhizostomeen mit besonderer berücksichtigung der Fauna des Malaiischen Archipels nebsteiner revision des Systems. Capita Zool. 1:1–179.
  • Swift HF, Gómez Daglio L, Dawson MN. 2016. Three routes to crypsis: stasis, convergence, and parallelism in the Mastigias species complex (Scyphozoa, Rhizostomeae). Mol Phylogenet Evol. 99:103–115. doi: 10.1016/j.ympev.2016.02.013.
  • Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22(22):4673–4680. doi: 10.1093/nar/22.22.4673.
  • Wang Y, Sun S. 2017. Complete mitochondrial genome of the jellyfish, Rhopilema esculentum Kishinouye 1891 (Cnidaria: Scyphozoa) and the phylogenetic relationship in the related species. Mitochondrial DNA B Resour. 2(1):167–168. doi: 10.1080/23802359.2017.1303342.
  • Wang Y, Yin J. 2020. Complete mitochondrial genome of the jellyfish, Chrysaora pacifica (Goette, 1886) (Cnidaria, Scyphozoa) and the phylogenetic relationship in the related species. Mitochondrial DNA B Resour. 5(1):455–456. doi: 10.1080/23802359.2019.1704648.
  • Watrous J, Thompson K. 1981. Chrysaora quinquecirrha (sea nettle) toxin: a comparison between a commercial and our own preparation. Toxicon. 19(2):319–322. doi: 10.1016/0041-0101(81)90035-0.