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Plastome Announcement

The complete plastome sequence of Heuchera micrantha Douglas ex Lindl. (Saxifragaceae), an ornamental plant

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Pages 1263-1267 | Received 21 Dec 2022, Accepted 06 Nov 2023, Published online: 30 Nov 2023

References

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19(5):455–477. doi: 10.1089/cmb.2012.0021.
  • Bai G, Fang L, Li S, Cui X. 2018. Characterization of the complete chloroplast genome sequence of Bergenia scopulosa (Saxifragales: saxifragaceae). Conservation Genet Resour. 10(3):363–366. doi: 10.1007/s12686-017-0825-y.
  • Dong W, Xu C, Wu P, Cheng T, Yu J, Zhou S, Hong DY. 2018. Resolving the systematic positions of enigmatic taxa: manipulating the chloroplast genome data of Saxifragales. Mol Phylogenet Evol. 126:321–330. doi: 10.1016/j.ympev.2018.04.033.
  • Folk RA, Sewnath N, Xiang CL, Sinn BT, Guralnick RP. 2020. Degradation of key photosynthetic genes in the critically endangered semi-aquatic flowering plant Saniculiphyllum guangxiense (Saxifragaceae). BMC Plant Biol. 20(1):324. doi: 10.1186/s12870-020-02533-x.
  • Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649. doi: 10.1093/bioinformatics/bts199.
  • Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efcient alignment of short DNA sequences to the human genome. Genome Biol. 10(3):R25. doi: 10.1186/gb-2009-10-3-r25.
  • Liu L, Du Y, Folk RA, Wang S, Soltis DE, Shang F, Li P. 2020. Plastome evolution in Saxifragaceae and multiple plastid capture events involving Heuchera and Tiarella. Front Plant Sci. 11:361. doi: 10.3389/fpls.2020.00361.
  • Liu L, Wang Y, He P, Li P, Lee J, Soltis DE, Fu C. 2018. Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data. BMC Genomics. 19(1):235. doi: 10.1186/s12864-018-4633-x.
  • Rozewicki J, Li S, Amada KM, Standley DM, Katoh K. 2019. MAFFT-DASH: integrated protein sequence and structural alignment. Nucleic Acids Res. 47(W1):W5–W10. doi: 10.1093/nar/gkz342.
  • Shi L, Chen H, Jiang M, Wang L, Wu X, Huang L, Liu C. 2019. CPGAVAS2, an integrated plastome sequence annotator and analyzer. Nucleic Acids Res. 47(W1):W65–W73. doi: 10.1093/nar/gkz345.
  • Soltis DE, Soltis PS, Ness BD. 1989. Chloroplast-DNA variation and multiple origins of autoploidy in Heuchera micrantha (Saxifragaceae). Evolution. 43(3):650–656.
  • Soltis DE, Mayer MS, Soltis PS, Edgerton M. 1991. Chloroplast-DNA variation in Tellima grandiflora (Saxifragaceae). Am J Bot. 78(10):1379–1390. doi: 10.1002/j.1537-2197.1991.tb12604.x.
  • Soltis DE, Kuzoff RK, Mort ME, Zanis M, Fishbein M, Hufford L, Koontz J, Arroyo MK. 2001. Elucidating deep-level phylogenetic relationships in Saxifragaceae using sequences for six chloroplastic and nuclear DNA regions. Ann Missouri Bot Gard. 88(4):669–693. doi: 10.2307/3298639.
  • Spongberg SA. 1972. The genera of Saxifragaceae in the Southeastern United States. J Arnold Arbor. 53(4):409–498. doi: 10.5962/p.324705.
  • Stamatakis A. 2014. RAxML Version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30(9):1312–1313. doi: 10.1093/bioinformatics/btu033.
  • Wang L, Liang J, Sa W, Wang L. 2021. Sequencing and comparative analysis of the chloroplast genome of Ribes odoratum provide insights for marker development and phylogenetics in Ribes. Physiol Mol Biol Plants. 27(1):81–92. doi: 10.1007/s12298-021-00932-4.