703
Views
1
CrossRef citations to date
0
Altmetric
Mitogenome Report

The complete mitochondrial genome of a new species of the genus Schizothorax from Sichuan, China (Cypriniformes: Cyprinidae)

, , , , &
Pages 1356-1359 | Received 21 May 2023, Accepted 21 Nov 2023, Published online: 08 Dec 2023

References

  • Bernt M, Donath A, J€uhling F, Externbrink F, Florentz C, Fritzsch G, P€utz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319. doi: 10.1016/j.ympev.2012.08.023.
  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120. doi: 10.1093/bioinformatics/btu170.
  • Broughton RE, Milam JE, Roe BA. 2001. The complete sequence of the zebrafish (Danio rerio) mitochondrial genome and evolutionary patterns in vertebrate mitochondrial DNA. Genome Res. 11(11):1958–1967. doi: 10.1101/gr.156801.
  • Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL. 2009. BLAST+: architecture and applications. BMC Bioinformatics. 10(1):421. doi: 10.1186/1471-2105-10-421.
  • Cao WX, Wu XW. 1964. Fauna of cyprinidacin China (volume I). Shanghai, China: Shanghai Science and Technology Press; p. 137–197.
  • Ding RH, Dai YX, Huag YY. 2022. A new species of the genus schizothorax from Sichuan, China (Cypriniformes: cyprinidae). Sichuan J Zool. 41(3):300–303.
  • Grant JR, Stothard P. 2008. The CGView Server: a comparative genomics tool for circular genomes. Nucleic Acids Res. 36:W181–4. doi: 10.1093/nar/gkn179.
  • Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL. 2004. Versatile and open software for comparing large genomes. Genome Biol. 5(2):R12. doi: 10.1186/gb-2004-5-2-r12.
  • Li ZL, Chen YX, Hu SY, Zhao HT. 2015. Multivariate Analysis on the Morphological Differentiation of Kozlov’s Schizothoracin (Schizothorax kozlovi) and David’s Schizothoracin (S. davidi). Chin J Zool. 50(4):547–554.
  • Mabuchi K, Miya M, Senou H, Suzuki T, Nishida M. 2006. Complete mitochondrial DNA sequence of the Lake Biwa wild strain of common carp (Cyprinus carpio L.): further evidence for an ancient origin. Aquaculture. 257(1–4):68–77. doi: 10.1016/j.aquaculture.2006.03.040.
  • Meland S, Johansen S, Johansen T, Haugli K, Haugli F. 1991. Rapid disappearance of one parental mitochondrial genotype after isogamous mating in the myxomycete physarum polycephalum. Curr Genet. 19(1):55–59. doi: 10.1007/BF00362088.
  • Meng GL, Li YY, Yang CT, Liu SL. 2019. MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization. Nucleic Acids Res. 47(11):e63–e63. doi: 10.1093/nar/gkz173.
  • Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, von Haeseler A, Lanfear R. 2020. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Mol Biol Evol. 37(5):1530–1534. doi: 10.1093/molbev/msaa015.
  • Qi D, Chao Y, Guo S, Zhao L, Li T, Wei F, Zhao X. 2012. Convergent, parallel and correlated evolution of trophic morphologies in the subfamily Schizothoracinae from the Qinghai-Tibetan Plateau. PLoS One. 7(3):e34070. doi: 10.1371/journal.pone.0034070.
  • Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61(3):539–542. doi: 10.1093/sysbio/sys029.
  • Xu QH, Zhang C, Zhang DS, Jiang HP, Peng SH, Liu Y, Zhao K, Wang CC, Chen LB. 2016. Analysis of the erythropoietin of a Tibetan Plateau schizothoracine fish (Gymnocypris dobula) reveals enhanced cytoprotection function in hypoxic environments. BMC Evol. Biol. 16(1):11.
  • Zheng Z, Yu E, Li ZF, Ou HX, Wang GJ. 2016. The complete mitochondrial genome of Shizothorax grahami (Cypriniformes: cyprinidae). Mitochondrial DNA B Resour. 1(1):775–776. doi: 10.1080/23802359.2016.1238757.