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Mitochondrial DNA Part B
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Volume 8, 2023 - Issue 12
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MitoGenome Report

Complete mitochondrial genome and phylogenetic analysis of the marine microalga Symbiochlorum hainanensis (Ulvophyceae, Chlorophyta)

Fangfang YangKey Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, ChinaCorrespondence[email protected]
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Lijuan LongKey Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, ChinaCorrespondence[email protected]
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Pages 1377-1380 | Received 15 Mar 2023, Accepted 28 Nov 2023, Published online: 18 Dec 2023

References

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19(5):455–477. doi: 10.1089/cmb.2012.0021.
  • Bernt M, Donath A, Juhling F, Externbrink F, Florentz C, Fritzsch G, Putz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319. doi: 10.1016/j.ympev.2012.08.023.
  • Doyle JJ. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
  • Fang L, Leliaert F, Zhang ZH, Penny D, Zhong BJ. 2017. Evolution of the Chlorophyta: insights from chloro-plast phylogenomic analyses. J Systematics Evol. 55(4):322–332. doi: 10.1111/jse.12248.
  • Gong SQ, Jin XJ, Xiao YL, Li ZY. 2020. Ocean acidification and warming lead to increased growth and altered chloroplast morphology in the thermo-tolerant alga Symbiochlorum hainanensis. Front Plant Sci. 11:585202. doi: 10.3389/fpls.2020.585202.
  • Gong SQ, Li ZY, Zhang FL, Xiao YL, Cheng H. 2018. Symbiochlorum hainanensis gen. et sp. nov. (Ulvophyceae, Chlorophyta) isolated from bleached corals living in the South China Sea. J Phycol. 54(6):811–817. doi: 10.1111/jpy.12779.
  • Katoh K, Standley DM. 2016. A simple method to control over-alignment in the MAFFT multiple sequence alignment program. Bioinformatics. 32(13):1933–1942. doi: 10.1093/bioinformatics/btw108.
  • Liu F, Melton JT, III Wang H, Wang J, Lopez-Bautista JM. 2022. Understanding the evolution of mitochondrial genomes in the green macroalgal genus Ulva (Ulvophyceae, Chlorophyta). Front Mar Sci. 9:269. doi: 10.3389/fmars.2022.850710.
  • Liu S, Ni Y, Li J, Zhang X, Yang H, Chen H, Liu C. 2023. CPGView: a package for visualizing detailed chloroplast genome structures. Mol Ecol Resour. 23(3):694–704. doi: 10.1111/1755-0998.13729.
  • Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, Haeseler AV, Lanfear R. 2020. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Mol Biol Evol. 37(5):1530–1534. doi: 10.1093/molbev/msaa015.
  • Pombert JF, Otis C, Lemieux C, Turmel M. 2004. The complete mitochondrial DNA sequence of the green alga Pseudendoclonium akinetum (Ulvophyceae) highlights distinctive evolutionary trends in the chlorophyta and suggests a sister-group relationship between the Ulvophyceae and Chlorophyceae. Mol Biol Evol. 21(5):922–935. doi: 10.1093/molbev/msh099.
  • Kalyaanamoorthy S, Minh BQ, Wong TKF, Haeseler AV, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 14(6):587–589. doi: 10.1038/nmeth.4285.
  • Zhou L, Wang L, Zhang J, Cai C, He P. 2016. Complete mitochondrial genome of Ulva prolifera, the dominant species of green macroalgal blooms in Yellow Sea, China. Mitochondrial DNA Part B Resour. 1(1):76–78. doi: 10.1080/23802359.2015.1137831.

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