Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 8, 2023 - Issue 12
Submit an article Journal homepage
225
Views
0
CrossRef citations to date
0
Altmetric
Plastome Report

The complete chloroplast genome of Hordeum marinum ssp. marinum

Suping Yua School of Ecology and Environment, Beijing Technology and Business University, Beijing, China;b State Environmental Protection Key Laboratory of Food Chain Pollution Control, Beijing Technology and Business University, Beijing, China;c Key Laboratory of Cleaner Production and Integrated Resource Utilization of China National Light Industry, Beijing Technology and Business University, Beijing, ChinaView further author information
&
Qingwei Dud Beijing Agro-Biotechnology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, ChinaCorrespondence[email protected]
View further author information
Pages 1426-1429 | Received 23 Jul 2023, Accepted 09 Dec 2023, Published online: 18 Dec 2023

References

  • Andrews S. 2010. FastQC: a quality control tool for high throughput sequence data.
  • Bolger AM, Marc L, Bjoern U. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120. doi:10.1093/bioinformatics/btu170.
  • Bortiri E, Coleman-Derr D, Lazo GR, Anderson OD, Gu YQ. 2008. The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes. BMC Res Notes. 1:61. doi:10.1186/1756-0500-1-61.
  • Huang L, Kuang L, Li X, Wu L, Wu D, Zhang G. 2018. Metabolomic and transcriptomic analyses reveal the reasons why Hordeum marinum has higher salt tolerance than Hordeum vulgare. Environ Exp Bot. 156:48–61. doi:10.1016/j.envexpbot.2018.08.019.
  • Jakob SS, Ihlow A, Blattner FR. 2007. Combined ecological niche modelling and molecular phylogeography revealed the evolutionary history of Hordeum marinum (Poaceae)-niche differentiation, loss of genetic diversity, and speciation in Mediterranean Quaternary refugia. Mol Ecol. 16(8):1713–1727. doi:10.1111/j.1365-294X.2007.03228.x.
  • Jin J, Yu W, Yang J, Song Y, DePamphilis CW, Yi T, Li D. 2020. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21(1):241. doi:10.1186/s13059-020-02154-5.
  • Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30(14):3059–3066. doi:10.1093/nar/gkf436.
  • Kozlov AM, Darriba D, Flouri T, Morel B, Stamatakis A. 2019. RAxML-NG: a fast, scalable, and user-friendly tool for maximum likelihood phylogenetic inference. Bioinformatics. 35(21):4453–4455. doi:10.1093/bioinformatics/btz305.
  • Kuang L, Shen Q, Chen L, Ye L, Yan T, Chen ZH, Waugh R, Li Q, Huang L, Cai S, et al. 2022. The genome and gene editing system of sea barleygrass provide a novel platform for cereal domestication and stress tolerance studies. Plant Commun. 3(5):100333. doi:10.1016/j.xplc.2022.100333.
  • Maier RM, Neckermann K, Igloi GL, Kössel H. 1995. Complete sequence of the maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing. J Mol Biol. 251(5):614–628. doi:10.1006/jmbi.1995.0460.
  • Middleton CP, Senerchia N, Stein N, Akhunov ED, Keller B, Wicker T, Kilian B. 2014. Sequencing of chloroplast genomes from wheat, barley, rye and their relatives provides a detailed insight into the evolution of the Triticeae tribe. PLoS One. 9(3):e85761. doi:10.1371/journal.pone.0085761.
  • Ogihara Y, Isono K, Kojima T, Endo A, Hanaoka M, Shiina T, Terachi T, Utsugi S, Murata M, Mori N, et al. 2002. Structural features of a wheat plastome as revealed by complete sequencing of chloroplast DNA. Mol Genet Genomics. 266(5):740–746. doi:10.1007/s00438-001-0606-9.
  • Saarela JM, Wysocki WP, Barrett CF, Soreng RJ, Davis JI, Clark LG, Kelchner SA, Pires JC, Edger PP, Mayfield DR, et al. 2015. Plastid phylogenomics of the cool-season grass subfamily: clarification of relationships among early-diverging tribes. AoB Plants. 7:plv046. doi:10.1093/aobpla/plv046.
  • Saski C, Lee SB, Fjellheim S, Guda C, Jansen RK, Luo H, Tomkins J, Rognli OA, Daniell H, Clarke JL. 2007. Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes. Theor Appl Genet. 115(4):571–590. doi:10.1007/s00122-007-0567-4.
  • Su X, Zhao J, Wang Z. 2020. The complete chloroplast genome of Hordeum brevisubulatum. Mitochondrial DNA B Resour. 5(3):2988–2989. doi:10.1080/23802359.2020.1797552.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq - versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–W11. doi:10.1093/nar/gkx391.
  • Zheng S, Poczai P, Hyvönen J, Tang J, Amiryousefi A. 2020. Chloroplot: an online program for the versatile plotting of organelle genomes. Front Genet. 11:576124. doi:10.3389/fgene.2020.576124.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.