212
Views
0
CrossRef citations to date
0
Altmetric
Plastome Report

Characteristics of the complete chloroplast genome of Saxifragaceae species Bergenia purpurascens (Hook. f. et Thoms.) Engl

, , , , , , , & show all
Pages 1454-1458 | Received 17 Jul 2023, Accepted 09 Dec 2023, Published online: 22 Dec 2023

References

  • Bai G, Fang L, Li S, Cui X. 2017. Characterization of the complete chloroplast genome sequence of Bergenia scopulosa (Saxifragales: saxifragaceae). Conservation Genet Resour. 10(3):363–366. doi: 10.1007/s12686-017-0825-y.
  • Bajracharya GB. 2015. Diversity, pharmacology and synthesis of bergenin and its derivatives: potential materials for therapeutic usages. Fitoterapia. 101:133–152. doi: 10.1016/j.fitote.2015.01.001.
  • Bajracharya GB, Maharjan R. 2013. Cytotoxicity, total phenolic content and antioxidant activity of Bergenia purpurascens rhizome. Nepal Journal of Science and Technology. 14(1):87–94. doi: 10.3126/njst.v14i1.8927.
  • Bajracharya GB, Maharjan R, Maharjan BL. 2012. Potential antibacterial activity of Bergenia purpurascens. Nepal Journal of Science and Technology. 12:157–162. doi: 10.3126/njst.v12i0.6494.
  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120. doi: 10.1093/bioinformatics/btu170.
  • Chen Z, Yu X, Yang Y, Wei P, Zhang W, Li X, Liu C, Zhao S, Li X, Liu X. 2022. Comparative analysis of chloroplast genomes within Saxifraga (Saxifragaceae) takes insights into their genomic evolution and adaption to the high-elevation environment. Genes (Basel). 13(9):1673. doi: 10.3390/genes13091673.
  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18. doi: 10.1093/nar/gkw955.
  • Gu X, Hao D, Xiao P. 2022. Research progress of Chinese herbal medicine compounds and their bioactivities: fruitful 2020. Chin Herb Med. 14(2):171–186. doi: 10.1016/j.chmed.2022.03.004.
  • Huerta-Cepas J, Serra F, Bork P. 2016. ETE 3: reconstruction, analysis, and visualization of phylogenomic data. Mol Biol Evol. 33(6):1635–1638. doi: 10.1093/molbev/msw046.
  • Jing L, Su S, Zhang D, Li Z, Lu D, Ge R. 2019. Srolo Bzhtang, a traditional Tibetan medicine formula, inhibits cigarette smoke induced airway inflammation and muc5ac hypersecretion via suppressing IL-13/STAT6 signaling pathway in rats. J Ethnopharmacol. 235:424–434. doi: 10.1093/nar/gki198.
  • Katoh K, Kuma K-i, Toh H, Miyata T. 2005. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 33(2):511–518. doi: 10.1093/nar/gki198.
  • Kostić M, Ivanov M, Babić SS, Petrović J, Soković M, Irić A. 2020. An up-to-date review on bio-resource therapeutics effective against bacterial species frequently associated with chronic sinusitis and tonsillitis. Curr Med Chem. 27(41):6892–6909. doi: 10.2174/0929867327666200505093143.
  • Koul B, Kumar A, Yadav D, Jin J. 2020. Bergenia genus: traditional uses, phytochemistry and pharmacology. Molecules. 25(23):5555. doi: 10.3390/molecules25235555.
  • Li Y, Jia L, Wang Z, Xing R, Chi X, Chen S, Gao Q. 2019. The complete chloroplast genome of Saxifraga sinomontana (Saxifragaceae) and comparative analysis with other Saxifragaceae species. Braz J Bot. 42(4):601–611. doi: 10.1007/s40415-019-00561-y.
  • Liu B, Wang M, Wang X. 2018. Phytochemical analysis and antibacterial activity of methanolic extract of Bergenia purpurascens against common respiratory infection causing bacterial species in vitro and in neonatal rats. Microb Pathog. 117:315–319. doi: 10.1016/j.micpath.2018.01.032.
  • Li B-H, Wu J-D, Li X-L. 2013. LC–MS/MS determination and pharmacokinetic study of bergenin, the main bioactive component of Bergenia purpurascens after oral administration in rats. J Pharm Anal. 3(4):229–234. doi: 10.1016/j.jpha.2013.01.005.
  • Lv X, Guan Y, Wang J, Zhou Y, Liu Q, Yu Z. 2021. Genetic diversity and relationship of China’s Bergenia Germplasm revealed by intersimple sequence repeat markers. J Amer Soc Hort Sci. 146(5):356–362. doi: 10.21273/JASHS05032-20.
  • Nguyen AD, Pasquier P, Marcotte D. 2015. Influence of groundwater flow in fractured aquifers on standing column wells performance. Geothermics. 58:39–48. doi: 10.1016/j.geothermics.2015.08.005.
  • Pandey R, Kumar B, Meena B, Srivastava M, Mishra T, Tiwari V, Pal M, Nair NK, Upreti DK, Rana TS. 2017. Major bioactive phenolics in Bergenia species from the Indian Himalayan region: method development, validation and quantitative estimation using UHPLC-QqQLIT-MS/MS. PLoS One. 12(7):e0180950. doi: 10.1371/journal.pone.0180950.
  • Patel DK, Patel K, Kumar R, Gadewar M, Tahilyani V. 2012. Pharmacological and analytical aspects of bergenin: a concise report. Asian Pacific J Tropical Dis. 2(2):163–167. doi: 10.1016/s2222-1808(12)60037-1.
  • Porebski S, Bailey LG, Baum BR. 1997. Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components. Plant Mol Biol Rep. 15(1):8–15. doi: 10.1007/BF02772108.
  • Qu Y, Zhang C, Liu R, Wu H, Sun Y, Zhang N, Nima C, Danpei Q, Zhang S, Sun Y. 2020. Rapid characterization the chemical constituents of Bergenia purpurascens and explore potential mechanism in treating osteoarthritis by ultrahigh-performance liquid chromatography coupled with quadrupole time of flight mass spectrometry combined with network pharmacology. J Sep Sci. 43(16):3333–3348. doi: 10.1002/jssc.201901284.
  • Shi L, Chen H, Jiang M, Wang L, Wu X, Huang L, Liu C. 2019. CPGAVAS2, an integrated plastome sequence annotator and analyzer. Nucleic Acids Res. 47(W1):W65–W73. doi: 10.1093/nar/gkz345.
  • Shi X, Li X, He J, Han Y, Li S, Zou M. 2014. Study on the antibacterialactivity of Bergenia purpurascens extract. Afr J Tradit Complement Altern Med. 11(2):464–468. doi: 10.4314/ajtcam.v11i2.34.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq–versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–W11. doi: 10.1093/nar/gkx391.
  • Wu Z, Liao R, Yang T, Dong X, Lan D, Qin R, Liu H. 2020. Analysis of six chloroplast genomes provides insight into the evolution of Chrysosplenium (Saxifragaceae). BMC Genomics. 21(1):621. doi: 10.1186/s12864-020-07045-4.
  • Xin-Min C, Yoshida T, Hatano T, Fukushima M, Okuda T. 1987. Galloylarbutin and other polyphenols from Bergenia purpurascens. Phytochemistry. 26(2):515–517. doi: 10.1016/s0031-9422(00)81446-6.
  • Yang L, Feng C, Cai M-M, Chen J-H, Ding P. 2020. Complete chloroplast genome sequence of Amomum villosum and comparative analysis with other Zingiberaceae plants. Chin Herb Med. 12(4):375–383. doi: 10.1016/j.chmed.2020.05.008.
  • Yang R, Li R, D M, Liu L. 2022. Characterization of the complete chloroplast genome of Peltoboykinia tellimoides (Saxifragaceae). Mitochondrial DNA B Resour. 7(5):741–743. doi: 10.1080/23802359.2022.2070040.
  • Żbikowska B, Franiczek R, Sowa A, Połukord G, Krzyżanowska B, Sroka Z. 2017. Antimicrobial and antiradical activity of extracts obtained from leaves of five species of the genus Bergenia: identification of antimicrobial compounds. Microb Drug Resist. 23(6):771–780. doi: 10.1089/mdr.2016.0251.
  • Zhang S, Liao Z-X, Huang R-Z, Gong C, Ji L, Sun H. 2017. A new aromatic glycoside and its anti-proliferative activities from the leaves of Bergenia purpurascens. Nat Prod Res. 32(6):668–675. doi: 10.1080/14786419.2017.1338278.
  • Zhang Y, Liao C, Liu X, Li J, Fang S, Li Y, He D. 2011. Biological advances in Bergenia genus plant. Afr J Biotechnol. 10(42):8166–8169. doi: 10.5897/ajb11.342.
  • Zhang T, Zeng C-X, Yang J-B, Li H-T, Li D-Z. 2016. Fifteen novel universal primer pairs for sequencing whole chloroplast genomes and a primer pair for nuclear ribosomal DNAs. J Sytem Evol. 54(3):219–227. doi: 10.1111/jse.12197.
  • Zhao M, Guo D, Liu G, Fu X, Gu Y, Ding L, Zhou Y. 2019. Antifungal halogenated cyclopentenones from the endophytic fungus Saccharicola bicolor of Bergenia purpurascens by the one strain-many compounds strategy. J Agric Food Chem. 68(1):185–192. doi: 10.1021/acs.jafc.9b06594.
  • Zhao J, Liu J, Zhang X, Liu Z, Tsering T, Zhong Y, Nan P. 2006. Chemical composition of the volatiles of three wild Bergenia species from western China. Flavour Fragrance J. 21(3):431–434. doi: 10.1002/ffj.1689.
  • Zheng S, Poczai P, Hyvönen J, Tang J, Amiryousefi A. 2020. Chloroplot: an online program for the versatile plotting of organelle genomes. Front Genet. 11:576124. doi: 10.3389/fgene.2020.576124.